This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository sniffles.
commit 504cf4daf5d3d3a84388a7300af35ad3ebda03cc Author: Andreas Tille <ti...@debian.org> Date: Fri Jan 13 15:05:21 2017 +0100 refresh patches --- debian/patches/external-libs.patch | 12 ++++++------ debian/patches/no-extra-binary.patch | 12 +++++++----- 2 files changed, 13 insertions(+), 11 deletions(-) diff --git a/debian/patches/external-libs.patch b/debian/patches/external-libs.patch index ae856cb..3b4482a 100644 --- a/debian/patches/external-libs.patch +++ b/debian/patches/external-libs.patch @@ -3,9 +3,9 @@ Author: Afif Elghraoui <a...@debian.org> Forwarded: not-needed Last-Update: 2016-06-18 ---- sniffles.orig/CMakeLists.txt -+++ sniffles/CMakeLists.txt -@@ -30,7 +30,5 @@ +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -30,7 +30,5 @@ if(OPENMP_FOUND) endif() @@ -13,8 +13,8 @@ Last-Update: 2016-06-18 -add_subdirectory(lib/bamtools-2.3.0) add_subdirectory(src) ---- sniffles.orig/src/CMakeLists.txt -+++ sniffles/src/CMakeLists.txt +--- a/src/CMakeLists.txt ++++ b/src/CMakeLists.txt @@ -1,6 +1,8 @@ cmake_minimum_required(VERSION 2.8) project(Sniffles) @@ -24,7 +24,7 @@ Last-Update: 2016-06-18 include_directories (../lib/bamtools-2.3.0/src) include_directories(../lib/tclap-1.2.1/include) -@@ -29,8 +31,8 @@ +@@ -30,8 +32,8 @@ add_executable(sniffles ) #target_link_libraries(ngm-core pthread) diff --git a/debian/patches/no-extra-binary.patch b/debian/patches/no-extra-binary.patch index 0c1f312..12139f8 100644 --- a/debian/patches/no-extra-binary.patch +++ b/debian/patches/no-extra-binary.patch @@ -4,12 +4,13 @@ Description: Do not build <target>-debug programs Author: Afif Elghraoui <a...@debian.org> Forwarded: not-needed Last-Update: 2016-06-18 ---- sniffles.orig/src/CMakeLists.txt -+++ sniffles/src/CMakeLists.txt -@@ -34,31 +34,3 @@ +--- a/src/CMakeLists.txt ++++ b/src/CMakeLists.txt +@@ -34,33 +34,4 @@ add_executable(sniffles + #target_link_libraries(ngm-core pthread) TARGET_LINK_LIBRARIES(sniffles bamtools) TARGET_LINK_LIBRARIES(sniffles z) - +- -add_executable(sniffles-debug - tree/Breakpoint_Tree.cpp - Genotyper/Genotyper.cpp @@ -18,6 +19,7 @@ Last-Update: 2016-06-18 - Sniffles.cpp - Ignore_Regions.cpp - tree/Intervall_bed.cpp +- tree/IntervallList.cpp - sub/Detect_Breakpoints.cpp - sub/Breakpoint.cpp - tree/IntervallTree.cpp @@ -37,4 +39,4 @@ Last-Update: 2016-06-18 -#target_link_libraries(sniffles-debug pthread) -TARGET_LINK_LIBRARIES(sniffles-debug BamTools-static) -TARGET_LINK_LIBRARIES(sniffles-debug zlibstatic) -- + -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sniffles.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit