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commit 23bfa136c7ac3f58ab8aba6f004ec7b73cc18358 Author: Anton Khodak <[email protected]> Date: Sat Jan 14 11:31:07 2017 +0200 initial debian packaging --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 25 ++++++++++++++++++++++ debian/copyright | 11 ++++++++++ debian/doc-base | 20 ++++++++++++++++++ debian/get-orig-source | 55 ++++++++++++++++++++++++++++++++++++++++++++++++ debian/rules | 26 +++++++++++++++++++++++ debian/source/format | 1 + debian/upstream/metadata | 12 +++++++++++ debian/watch | 3 +++ 10 files changed, 159 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..19b5753 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +gxargparse (0.3.1-1) UNRELEASED; urgency=medium + + * Initial release (Closes: #<bug>) + + -- Anton Khodak <[email protected]> Sat, 14 Jan 2017 10:49:57 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..f599e28 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +10 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..d54a589 --- /dev/null +++ b/debian/control @@ -0,0 +1,25 @@ +Source: gxargparse +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Anton Khodak <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 10) +Standards-Version: 3.9.7 +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/gxargparse.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/gxargparse.git +Homepage: https://github.com/common-workflow-language/gxargparse + +Package: gxargparse +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: Automated CWL and Galaxy XML generation for Python tools that use argparse and click + This project aims to be a drop-in replacement for argparse which allows + generating Galaxy XML and CWL Tools. It is quite literally a drop-in + replacement. You (or the upstream tool author) can use argparse + completely as normal "import argparse". When this package is installed, + with its argparse module ahead of the system argparse, argparse2tool + will capture all argparse function calls, and process them specially. + This information captured in this process is used to produce Galaxy Tool + XML when it's requested with the --generate_galaxy_xml flag, or CWLTools + when requested with the --generate_cwl_tool flag. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..3416315 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,11 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: <pkg> +Source: <path_to_download> + +Files: * +Copyright: © 20xx-20yy <upstream> +License: <license> + +Files: debian/* +Copyright: © 2016 maintainername <[email protected]> +License: <license> diff --git a/debian/doc-base b/debian/doc-base new file mode 100644 index 0000000..5e7e1d4 --- /dev/null +++ b/debian/doc-base @@ -0,0 +1,20 @@ +Document: <pkg> +Title: <title for this doc> +Author: <author of this doc> +Abstract: <if you have no better clue the short and + long description from debian/control might fit here as well> +Section: Science/{Biology,Medicine} # see /usr/share/doc/doc-base/doc-base.txt.gz "2.3.3. The `section' field" + +# pick one of the below options +Format: Text +Files: /usr/share/doc/<pkg>/<pkg>.txt.gz + +Format: html +Index: /usr/share/doc/<pkg>/html/index.html +Files: /usr/share/doc/<pkg>/html/* + +Format: pdf +Files: /usr/share/doc/<pkg>/<pkg>.pdf.gz + +Format: postscript +Files: /usr/share/doc/<pkg>/<pkg>.ps.gz diff --git a/debian/get-orig-source b/debian/get-orig-source new file mode 100755 index 0000000..2aa782f --- /dev/null +++ b/debian/get-orig-source @@ -0,0 +1,55 @@ +#!/bin/sh +# if you need to repack for whatever reason you can +# use this script via uscan or directly +# +# FIXME: currently the code is not conform to Debian Policy +# http://www.debian.org/doc/debian-policy/ch-source.html +# "get-orig-source (optional)" +# This target may be invoked in any directory, ... +# --> currently it is assumed the script is called in the +# source directory featuring the debian/ dir + +# Excluding files and repacking archives +# -------------------------------------- +# See also mk-origtargz(1) and the --repack option to uscan(1), which +# honor the Files-Excluded list in debian/copyright. +# That may be all you need, especially since the repack option can be set +# in debian/watch. + +# For an example how to fetch source from sourceforge SVN see +# https://anonscm.debian.org/git/debian-med/kmer-tools.git + +COMPRESS=xz + +set -e +NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'` + +if ! echo $@ | grep -q upstream-version ; then + VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'` + uscan --force-download +else + VERSION=`echo $@ | sed "s?^.*--upstream-version \([0-9.]\+\) .*${NAME}.*?\1?"` + if echo "$VERSION" | grep -q "upstream-version" ; then + echo "Unable to parse version number" + exit + fi +fi + +TARDIR=${NAME}-${VERSION} +mkdir -p ../tarballs +cd ../tarballs +# need to clean up the tarballs dir first because upstream tarball might +# contain a directory with unpredictable name +rm -rf * +tar -xaf ../${TARDIR}.tar.gz + +UPSTREAMTARDIR=`find . -mindepth 1 -maxdepth 1 -type d` +if [ "${UPSTREAMTARDIR}" != "${TARDIR}" ] ; then + mv "${UPSTREAMTARDIR}" "${TARDIR}" +fi + +# Remove useless binaries +# ... do something which needs to be done ... + +GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -caf "$NAME"_"$VERSION".orig.tar.${COMPRESS} "${TARDIR}" +rm -rf ${TARDIR} diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..1ef14d9 --- /dev/null +++ b/debian/rules @@ -0,0 +1,26 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 +export LC_ALL=C.UTF-8 + +# some helpful variables - uncomment them if needed +# shamelessly stolen from http://jmtd.net/log/awk/ +#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') +#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') +#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') +#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) +#GIT_TAG := $(subst ~,_,$(VERSION)) + +# alternatively to manually set those variables, you can +# include /usr/share/dpkg/default.mk +# and use what is set there. + +# for hardening you might like to uncomment this: +# export DEB_BUILD_MAINT_OPTIONS=hardening=+all + +%: + dh $@ + +#get-orig-source: +# . debian/get-orig-source diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/upstream/metadata b/debian/upstream/metadata new file mode 100644 index 0000000..d8b5812 --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,12 @@ +Reference: + Author: + Title: + Journal: + Year: + Volume: + Number: + Pages: + DOI: + PMID: + URL: + eprint: diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..dad3d81 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=4 +https://github.com/common-workflow-language/gxargparse/releases .*/archive/v*(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) + -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gxargparse.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
