This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository gbrowse.
commit b66a6d45f8994a3a84a2d0aa226cdf4cffafd015 Author: Andreas Tille <[email protected]> Date: Wed Jan 18 16:07:31 2017 +0100 Fix manpage synopsises and spelling --- debian/changelog | 1 + debian/gbrowse_set_admin_passwd.1 | 2 +- debian/patches/fix_whatis_entry.patch | 26 ++++++++++++++++ debian/patches/series | 2 ++ debian/patches/spelling.patch | 58 +++++++++++++++++++++++++++++++++++ 5 files changed, 88 insertions(+), 1 deletion(-) diff --git a/debian/changelog b/debian/changelog index 0dea37a..bd4830b 100644 --- a/debian/changelog +++ b/debian/changelog @@ -20,6 +20,7 @@ gbrowse (2.56+dfsg-1) UNRELEASED; urgency=medium * Add $remote_fs to required-start * Add missing Depends: lsb-base (>= 3.0-6) * Fix runlevel of initscript + * Fix manpage synopsises and spelling -- Andreas Tille <[email protected]> Wed, 18 Jan 2017 14:42:04 +0100 diff --git a/debian/gbrowse_set_admin_passwd.1 b/debian/gbrowse_set_admin_passwd.1 index 5ddc881..4783ef6 100644 --- a/debian/gbrowse_set_admin_passwd.1 +++ b/debian/gbrowse_set_admin_passwd.1 @@ -1,6 +1,6 @@ .TH GBrowse2 1 "February 07, 2011" "version 1.1.0" "USER COMMANDS" .SH NAME -gbrowse_setadmin_passwd \- Sets the adminstrator password for the GBrowse admin +gbrowse_setadmin_passwd \- Sets the administrator password for the GBrowse admin .SH SYNOPSIS .B gbrowse_create_account [-pass password -name user] .I user Admin user name (default, admin) diff --git a/debian/patches/fix_whatis_entry.patch b/debian/patches/fix_whatis_entry.patch new file mode 100644 index 0000000..5fc7408 --- /dev/null +++ b/debian/patches/fix_whatis_entry.patch @@ -0,0 +1,26 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Wed, 18 Jan 2017 14:42:04 +0100 +Description: Fix whatis entries in manpages + +--- a/bin/gbrowse_aws_balancer.pl ++++ b/bin/gbrowse_aws_balancer.pl +@@ -2,7 +2,7 @@ + + =head1 NAME + +-gbrowse_aws_balancer.pl Load balance GBrowse using Amazon Web Service instances ++gbrowse_aws_balancer.pl - Load balance GBrowse using Amazon Web Service instances + + =head1 SYNOPSIS + +--- a/bin/gbrowse_sync_aws_slave.pl ++++ b/bin/gbrowse_sync_aws_slave.pl +@@ -2,7 +2,7 @@ + + =head1 NAME + +-gbrowse_sync_aws_slave.pl Synchronize local file system to GBrowse slave volume. ++gbrowse_sync_aws_slave.pl - Synchronize local file system to GBrowse slave volume. + + =head1 SYNOPSIS + diff --git a/debian/patches/series b/debian/patches/series index 780cd5c..d840f87 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -6,3 +6,5 @@ skip_check_installed_test.patch source_init_functions init_script_dependency.patch fix_runlevel.patch +spelling.patch +fix_whatis_entry.patch diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch new file mode 100644 index 0000000..198c859 --- /dev/null +++ b/debian/patches/spelling.patch @@ -0,0 +1,58 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Wed, 18 Jan 2017 14:42:04 +0100 +Description: Fix spelling + +--- a/bin/gtf2gff3.pl ++++ b/bin/gtf2gff3.pl +@@ -1443,8 +1443,8 @@ author for support. + + =item C<< FATAL: Invalid feature set: process_start >> + +-We tried to consider all possible ways of infering a start codon or +-infering a a non-coding gene, and yet we've failed. Your combination ++We tried to consider all possible ways of inferring a start codon or ++inferring a a non-coding gene, and yet we've failed. Your combination + of gene features doesn't make sense to us. You should never get + this error, and if you do, we'd really like to see the GTF file that + generated it. Please contact the author for support. +@@ -1463,15 +1463,15 @@ author for support. + + =item C<< FATAL: Invalid feature set: process_stop >> + +-We tried to consider all possible ways of infering a stop codon or +-infering a a non-coding gene, and yet we've failed. Your combination ++We tried to consider all possible ways of inferring a stop codon or ++inferring a a non-coding gene, and yet we've failed. Your combination + of gene features doesn't make sense to us. You should never get + this error, and if you do, we'd really like to see the GTF file that + generated it. Please contact the author for support. + + =item C<< FATAL: Invalid feature set: process_exon_CDS_UTR >> + +-We tried to consider all possible ways of infering exons, CDSs and ++We tried to consider all possible ways of inferring exons, CDSs and + UTRs and yet we've failed. Your combination of gene features doesn't + make sense to us. You really should ever get this error, and if you + do, we'd really like to see the GTF file that generated it. Please +--- a/docs/pod/PLUGINS_HOWTO.pod ++++ b/docs/pod/PLUGINS_HOWTO.pod +@@ -290,7 +290,7 @@ be stored in the hash returned by config + This method returns the path to the directory in which gbrowse + stores its configuration files. This is very useful for storing + plugin-specific configuration files. See the sourcecode of +-RestrictionAnnotator for an exmaple of this. ++RestrictionAnnotator for an example of this. + + =back + +--- a/lib/Bio/Graphics/Browser2/Plugin.pm ++++ b/lib/Bio/Graphics/Browser2/Plugin.pm +@@ -401,7 +401,7 @@ that are not passed a segment object. + This method returns the path to the directory in which gbrowse stores + its configuration files. This is very useful for storing + plugin-specific configuration files. See the sourcecode of +-RestrictionAnnotator for an exmaple of this. ++RestrictionAnnotator for an example of this. + + =item $feature_file = $self->new_feature_file + -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gbrowse.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
