This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-bioc-limma.
commit b05eadad4e3e68d7598081f9691448595df24f2b Author: Andreas Tille <[email protected]> Date: Fri Jan 20 09:34:30 2017 +0100 New upstream version --- debian/changelog | 6 +++ debian/patches/do_not_attempt_GO.db_test.patch | 58 +++++++++++++------------- 2 files changed, 35 insertions(+), 29 deletions(-) diff --git a/debian/changelog b/debian/changelog index 0247df5..ded14a7 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +r-bioc-limma (3.30.8+dfsg-1) unstable; urgency=medium + + * New upstream version + + -- Andreas Tille <[email protected]> Fri, 20 Jan 2017 09:15:01 +0100 + r-bioc-limma (3.30.7+dfsg-2) unstable; urgency=medium * Add missing test depends: r-cran-statmod diff --git a/debian/patches/do_not_attempt_GO.db_test.patch b/debian/patches/do_not_attempt_GO.db_test.patch index 5dd0d8a..ac89138 100644 --- a/debian/patches/do_not_attempt_GO.db_test.patch +++ b/debian/patches/do_not_attempt_GO.db_test.patch @@ -23,40 +23,40 @@ Description: the test is usin GO.db which is not yet packaged -> go <- goana(fit,FDR=0.8,geneid=EB) -> topGO(go,n=10,truncate.term=30) - Term Ont N Up Down P.Up --GO:0006915 apoptotic process BP 5 4 1 0.003446627 --GO:0012501 programmed cell death BP 5 4 1 0.003446627 +-GO:0009653 anatomical structure morpho... BP 10 1 4 0.936627742 +-GO:0048856 anatomical structure develo... BP 23 4 6 0.844070086 +-GO:0032502 developmental process BP 23 4 6 0.844070086 -GO:0055082 cellular chemical homeostas... BP 2 0 2 1.000000000 --GO:0006897 endocytosis BP 3 3 0 0.005046382 --GO:0048856 anatomical structure develo... BP 23 3 5 0.845083285 --GO:0032502 developmental process BP 23 3 5 0.845083285 --GO:0008219 cell death BP 6 4 1 0.009129968 --GO:0019725 cellular homeostasis BP 3 0 2 1.000000000 --GO:0048232 male gamete generation BP 3 0 2 1.000000000 --GO:0007283 spermatogenesis BP 3 0 2 1.000000000 +-GO:0006915 apoptotic process BP 5 4 1 0.009503355 +-GO:0012501 programmed cell death BP 5 4 1 0.009503355 +-GO:0006897 endocytosis BP 3 3 0 0.010952381 +-GO:0031988 membrane-bounded vesicle CC 19 4 5 0.691026648 +-GO:0016485 protein processing BP 7 1 3 0.849770470 +-GO:0005615 extracellular space CC 13 5 4 0.143422146 - P.Down --GO:0006915 0.309695910 --GO:0012501 0.309695910 --GO:0055082 0.004242424 +-GO:0009653 0.008224876 +-GO:0048856 0.009014340 +-GO:0032502 0.009014340 +-GO:0055082 0.009090909 +-GO:0006915 0.416247633 +-GO:0012501 0.416247633 -GO:0006897 1.000000000 --GO:0048856 0.006651547 --GO:0032502 0.006651547 --GO:0008219 0.360560422 --GO:0019725 0.012294372 --GO:0048232 0.012294372 --GO:0007283 0.012294372 +-GO:0031988 0.020081679 +-GO:0016485 0.020760307 +-GO:0005615 0.023836810 -> topGO(go,n=10,truncate.term=30,sort="down") - Term Ont N Up Down P.Up P.Down --GO:0055082 cellular chemical homeostas... BP 2 0 2 1.0000000 0.004242424 --GO:0048856 anatomical structure develo... BP 23 3 5 0.8450833 0.006651547 --GO:0032502 developmental process BP 23 3 5 0.8450833 0.006651547 --GO:0019725 cellular homeostasis BP 3 0 2 1.0000000 0.012294372 --GO:0048232 male gamete generation BP 3 0 2 1.0000000 0.012294372 --GO:0007283 spermatogenesis BP 3 0 2 1.0000000 0.012294372 --GO:0009653 anatomical structure morpho... BP 10 0 3 1.0000000 0.020760307 --GO:0031988 membrane-bounded vesicle CC 19 1 4 0.9851064 0.023153004 --GO:0007276 gamete generation BP 4 0 2 1.0000000 0.023749721 --GO:0032504 multicellular organism repr... BP 4 0 2 1.0000000 0.023749721 +-GO:0009653 anatomical structure morpho... BP 10 1 4 0.9366277 0.008224876 +-GO:0048856 anatomical structure develo... BP 23 4 6 0.8440701 0.009014340 +-GO:0032502 developmental process BP 23 4 6 0.8440701 0.009014340 +-GO:0055082 cellular chemical homeostas... BP 2 0 2 1.0000000 0.009090909 +-GO:0031988 membrane-bounded vesicle CC 19 4 5 0.6910266 0.020081679 +-GO:0016485 protein processing BP 7 1 3 0.8497705 0.020760307 +-GO:0005615 extracellular space CC 13 5 4 0.1434221 0.023836810 +-GO:0031982 vesicle CC 20 4 5 0.7361976 0.025464546 +-GO:0009887 animal organ morphogenesis BP 3 0 2 1.0000000 0.025788497 +-GO:0019725 cellular homeostasis BP 3 0 2 1.0000000 0.025788497 -> -> proc.time() - user system elapsed -- 2.88 0.18 3.08 +- 3.13 0.26 4.14 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-limma.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
