This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository roguenarok.
commit a032295efc004594f893eef388fce104c5b35a01 Author: Andreas Tille <[email protected]> Date: Mon Mar 13 11:48:00 2017 +0100 Initial packaging --- debian/changelog | 5 +++++ debian/clean | 1 + debian/compat | 1 + debian/control | 19 +++++++++++++++++++ debian/copyright | 26 ++++++++++++++++++++++++++ debian/install | 5 +++++ debian/rules | 15 +++++++++++++++ debian/source/format | 1 + debian/upstream/metadata | 12 ++++++++++++ debian/watch | 3 +++ 10 files changed, 88 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..3966f90 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +roguenarok (1.0-1) UNRELEASED; urgency=medium + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Mon, 13 Mar 2017 11:13:16 +0100 diff --git a/debian/clean b/debian/clean new file mode 100644 index 0000000..afd9e16 --- /dev/null +++ b/debian/clean @@ -0,0 +1 @@ +roguenarok-* diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..f599e28 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +10 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..edaaeff --- /dev/null +++ b/debian/control @@ -0,0 +1,19 @@ +Source: roguenarok +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 10) +Standards-Version: 3.9.8 +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/roguenarok.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/roguenarok.git +Homepage: https://github.com/aberer/RogueNaRok + +Package: roguenarok +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: versatile and scalable algorithm for rogue taxon identification + RogueNaRok is a versatile and scalable algorithm for rogue taxon + identification. Also includes implementations of the maximum agreement + subtree, leaf stability index and taxonomic instability index diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..95e6fe6 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,26 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: RogueNaRok +Upstream-Contact: Andre J. Aberer <[email protected]> +Source: https://github.com/aberer/RogueNaRok/releases + +Files: * +Copyright: 2011 Andre J. Aberer <[email protected]> +License: GPL-2+ + +Files: debian/* +Copyright: 2017 Andreas Tille <[email protected]> +License: GPL-2+ + +License: GPL-2+ + This program is free software; you may redistribute it and/or + modify its under the terms of the GNU General Public License as + published by the Free Software Foundation; either version 2 of the + License, or (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + General Public License for more details. + . + On Debian systems you can find a copy of the GNU General Public + License version 2 at /usr/share/common-licenses/GPL-2. diff --git a/debian/install b/debian/install new file mode 100644 index 0000000..df723f4 --- /dev/null +++ b/debian/install @@ -0,0 +1,5 @@ +roguenarok-* usr/bin +rnr-lsi usr/bin +rnr-mast usr/bin +rnr-prune usr/bin +rnr-tii usr/bin diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..8acd608 --- /dev/null +++ b/debian/rules @@ -0,0 +1,15 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +export DEB_BUILD_MAINT_OPTIONS=hardening=+all + +%: + dh $@ + +override_dh_auto_build: + dh_auto_build + mv RogueNaRok roguenarok-single + make clean + dh_auto_build -- mode=parallel + mv RogueNaRok-parallel roguenarok-parallel diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/upstream/metadata b/debian/upstream/metadata new file mode 100644 index 0000000..5361fd4 --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,12 @@ +Reference: + Author: Andre J. Aberer and Denis Krompass and Alexandros Stamatakis + Title: "Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice" + Journal: Systematic Biology + Year: 2013 + Volume: 62 + Number: 1 + Pages: 162-166 + DOI: 10.1093/sysbio/sys078 + PMID: 22962004 + URL: https://academic.oup.com/sysbio/article-lookup/doi/10.1093/sysbio/sys078 + eprint: https://academic.oup.com/sysbio/article-pdf/62/1/162/4666711/sys078.pdf diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..0ac61d1 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=4 + +https://github.com/aberer/RogueNaRok/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/roguenarok.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
