This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository ngopt.
commit 6beb5cf23f3fe157fa7d8d5671ce3e72f2ed3fe9 Author: Andreas Tille <[email protected]> Date: Tue Apr 11 11:45:34 2017 +0200 Consider packaging, last stumbling stone seems to be jsc.jar which has a totally broken license: http://www.jsc.nildram.co.uk/terms.html --- debian/changelog | 2 +- debian/control | 13 ++++++++++--- debian/get-orig-source | 35 +++++++++++++++++++++++++++++++++++ debian/rules | 3 +-- debian/watch | 3 ++- 5 files changed, 49 insertions(+), 7 deletions(-) diff --git a/debian/changelog b/debian/changelog index d475b5f..ddd9778 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,4 +1,4 @@ -ngopt (0.0.20150522-1) local; urgency=low +ngopt (0.0.20160825-1) local; urgency=low * local use, no intend to release diff --git a/debian/control b/debian/control index ed1d343..2aaf01e 100644 --- a/debian/control +++ b/debian/control @@ -3,8 +3,11 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 9) -Standards-Version: 3.9.6 +Build-Depends: debhelper (>= 10), + libconcurrent-java, + libcolt-free-java, + libjgrapht0.6-java +Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/ngopt.git Vcs-Git: git://anonscm.debian.org/debian-med/ngopt.git Homepage: http://sourceforge.net/projects/ngopt/ @@ -12,7 +15,11 @@ Homepage: http://sourceforge.net/projects/ngopt/ Package: ngopt Architecture: any Depends: ${shlibs:Depends}, - ${misc:Depends} + ${misc:Depends}, + ${java:Depends}, + libconcurrent-java, + libcolt-free-java, + libjgrapht0.6-java Description: de novo assembly & analysis of Illumina sequence data de novo assembly & analysis of Illumina sequence data, including the A5 pipeline, A5-miseq, tools to evaluate assembly quality, and scripts to diff --git a/debian/get-orig-source b/debian/get-orig-source new file mode 100755 index 0000000..92dbeab --- /dev/null +++ b/debian/get-orig-source @@ -0,0 +1,35 @@ +#!/bin/sh +# get source for ngopt from SVN because there is no source tarball distribution + +set -e +NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'` + +if ! echo $@ | grep -q upstream-version ; then + VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'` +else + VERSION=`echo $@ | sed "s?^.*--upstream-version \([0-9.]\+\) .*${NAME}.*?\1?"` + if echo "$VERSION" | grep -q "upstream-version" ; then + echo "Unable to parse version number" + exit + fi +fi + +SVNURI="https://svn.code.sf.net/p/ngopt/code/trunk"; +revision=`LANG=C svn info ${SVNURI} | grep "^Last Changed Rev:" | sed 's/Last Changed Rev: *//'` +VERSION=`echo ${VERSION}| sed "s/+[0-9]\+$//"`+${revision} + +TARDIR=${NAME}-${VERSION} + +mkdir -p ../tarballs +cd ../tarballs +# svn export conserves time stamps of the files, checkout does not +LC_ALL=C svn export ${SVNURI} ${TARDIR} >/dev/null 2>/dev/null + +cd ${TARDIR} +rm -rf idba* linux-x64 ms osx SSPACE FISH bin/idba_pe +rm -f ext/c* ext/jg* +echo "Needs packaging jsc.jar: http://www.jsc.nildram.co.uk/downloads/download.html"; +cd .. + +tar --owner=root --group=root --mode=a+rX -caf "$NAME"_"$VERSION".orig.tar.xz "${TARDIR}" +rm -rf "${NAME}"-"$VERSION" diff --git a/debian/rules b/debian/rules index 89e20d0..853664f 100755 --- a/debian/rules +++ b/debian/rules @@ -6,5 +6,4 @@ dh $@ get-orig-source: - mkdir -p ../tarballs - uscan --verbose --force-download --destdir ../tarballs + . debian/get-orig-source diff --git a/debian/watch b/debian/watch index 4074d92..b62cfbf 100644 --- a/debian/watch +++ b/debian/watch @@ -1,3 +1,4 @@ version=3 opts=uversionmangle=s/^/0.0./ \ - http://sf.net/ngopt/a5_miseq_linux_(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) + http://sf.net/ngopt/a5_miseq_linux_(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) \ + debian debian/get-orig-source -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/ngopt.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
