This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository hmmer2.
from bc67736 Imported Upstream version 2.3.2
new c71b80a New upstream version 2.3.2+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
squid/00README | 39 -
squid/Makefile.in | 314 --
squid/Testsuite/00README | 21 -
squid/Testsuite/Makefile.in | 90 -
squid/Testsuite/bug-1-sfetch-paths | 29 -
squid/Testsuite/iospeed_main.c | 88 -
squid/Testsuite/rndspeed_main.c | 41 -
squid/Testsuite/sqdconfig_main.c | 33 -
squid/Testsuite/testsuite.pm | 44 -
squid/Testsuite/x-base-afetch | 11 -
squid/Testsuite/x-base-alistat | 14 -
squid/Testsuite/x-base-seqstat | 22 -
squid/Testsuite/x-base-sfetch | 9 -
squid/Testsuite/x-base-shuffle | 7 -
squid/Testsuite/x-base-sindex | 21 -
squid/Testsuite/x-base-sreformat | 13 -
squid/a2m.c | 115 -
squid/afetch_main.c | 184 -
squid/aligneval.c | 510 ---
squid/alignio.c | 642 ---
squid/alistat_main.c | 275 --
squid/clustal.c | 181 -
squid/cluster.c | 542 ---
squid/compalign_main.c | 223 -
squid/compstruct_main.c | 323 --
squid/config.sub | 1375 ------
squid/configure | 8042 ------------------------------------
squid/dayhoff.c | 173 -
squid/eps.c | 118 -
squid/file.c | 274 --
squid/getopt.c | 253 --
squid/gki.c | 390 --
squid/gki.h | 51 -
squid/gsi.c | 387 --
squid/gsi.h | 85 -
squid/gsi64.c | 397 --
squid/gsi64.h | 101 -
squid/hsregex.c | 1361 ------
squid/install-sh | 251 --
squid/iupac.c | 221 -
squid/msa.c | 1440 -------
squid/msa.h | 298 --
squid/msf.c | 391 --
squid/phylip.c | 176 -
squid/revcomp.c | 90 -
squid/revcomp_main.c | 108 -
squid/rk.c | 132 -
squid/rk.h | 40 -
squid/selex.c | 828 ----
squid/seqencode.c | 176 -
squid/seqsplit_main.c | 277 --
squid/seqstat_main.c | 238 --
squid/sfetch_main.c | 464 ---
squid/shuffle.c | 641 ---
squid/shuffle_main.c | 336 --
squid/sindex_main.c | 219 -
squid/sqerror.c | 94 -
squid/sqfuncs.h | 272 --
squid/sqio.c | 1933 ---------
squid/squid.h.in | 475 ---
squid/squidconf.h.in | 122 -
squid/squidcore.c | 55 -
squid/sre_ctype.c | 37 -
squid/sre_math.c | 334 --
squid/sre_random.c | 315 --
squid/sre_random.h | 18 -
squid/sre_string.c | 527 ---
squid/sreformat_main.c | 260 --
squid/ssi.c | 1530 -------
squid/ssi.h | 191 -
squid/stack.c | 101 -
squid/stockholm.c | 630 ---
squid/stockholm.h | 51 -
squid/stopwatch.c | 309 --
squid/stopwatch.h | 63 -
squid/test_main.c | 27 -
squid/translate.c | 84 -
squid/translate_main.c | 237 --
squid/types.c | 230 --
squid/vectorops.c | 299 --
squid/vectorops.h | 36 -
squid/weight.c | 751 ----
squid/weight_main.c | 189 -
83 files changed, 32294 deletions(-)
delete mode 100644 squid/00README
delete mode 100644 squid/Makefile.in
delete mode 100644 squid/Testsuite/00README
delete mode 100644 squid/Testsuite/Makefile.in
delete mode 100644 squid/Testsuite/bug-1-sfetch-paths
delete mode 100644 squid/Testsuite/iospeed_main.c
delete mode 100644 squid/Testsuite/rndspeed_main.c
delete mode 100644 squid/Testsuite/sqdconfig_main.c
delete mode 100644 squid/Testsuite/testsuite.pm
delete mode 100644 squid/Testsuite/x-base-afetch
delete mode 100644 squid/Testsuite/x-base-alistat
delete mode 100644 squid/Testsuite/x-base-seqstat
delete mode 100644 squid/Testsuite/x-base-sfetch
delete mode 100644 squid/Testsuite/x-base-shuffle
delete mode 100644 squid/Testsuite/x-base-sindex
delete mode 100644 squid/Testsuite/x-base-sreformat
delete mode 100644 squid/a2m.c
delete mode 100644 squid/afetch_main.c
delete mode 100644 squid/aligneval.c
delete mode 100644 squid/alignio.c
delete mode 100644 squid/alistat_main.c
delete mode 100644 squid/clustal.c
delete mode 100644 squid/cluster.c
delete mode 100644 squid/compalign_main.c
delete mode 100644 squid/compstruct_main.c
delete mode 100644 squid/config.sub
delete mode 100755 squid/configure
delete mode 100644 squid/dayhoff.c
delete mode 100644 squid/eps.c
delete mode 100644 squid/file.c
delete mode 100644 squid/getopt.c
delete mode 100644 squid/gki.c
delete mode 100644 squid/gki.h
delete mode 100644 squid/gsi.c
delete mode 100644 squid/gsi.h
delete mode 100644 squid/gsi64.c
delete mode 100644 squid/gsi64.h
delete mode 100644 squid/hsregex.c
delete mode 100644 squid/install-sh
delete mode 100644 squid/iupac.c
delete mode 100644 squid/msa.c
delete mode 100644 squid/msa.h
delete mode 100644 squid/msf.c
delete mode 100644 squid/phylip.c
delete mode 100644 squid/revcomp.c
delete mode 100644 squid/revcomp_main.c
delete mode 100644 squid/rk.c
delete mode 100644 squid/rk.h
delete mode 100644 squid/selex.c
delete mode 100644 squid/seqencode.c
delete mode 100644 squid/seqsplit_main.c
delete mode 100644 squid/seqstat_main.c
delete mode 100644 squid/sfetch_main.c
delete mode 100644 squid/shuffle.c
delete mode 100644 squid/shuffle_main.c
delete mode 100644 squid/sindex_main.c
delete mode 100644 squid/sqerror.c
delete mode 100644 squid/sqfuncs.h
delete mode 100644 squid/sqio.c
delete mode 100644 squid/squid.h.in
delete mode 100644 squid/squidconf.h.in
delete mode 100644 squid/squidcore.c
delete mode 100644 squid/sre_ctype.c
delete mode 100644 squid/sre_math.c
delete mode 100644 squid/sre_random.c
delete mode 100644 squid/sre_random.h
delete mode 100644 squid/sre_string.c
delete mode 100644 squid/sreformat_main.c
delete mode 100644 squid/ssi.c
delete mode 100644 squid/ssi.h
delete mode 100644 squid/stack.c
delete mode 100644 squid/stockholm.c
delete mode 100644 squid/stockholm.h
delete mode 100644 squid/stopwatch.c
delete mode 100644 squid/stopwatch.h
delete mode 100644 squid/test_main.c
delete mode 100644 squid/translate.c
delete mode 100644 squid/translate_main.c
delete mode 100644 squid/types.c
delete mode 100644 squid/vectorops.c
delete mode 100644 squid/vectorops.h
delete mode 100644 squid/weight.c
delete mode 100644 squid/weight_main.c
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