This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository psortb.
commit 6b1366eb5cdc6f078e477d9ff4e6d00843d76ab5 Author: Andreas Tille <[email protected]> Date: Wed Apr 19 20:17:47 2017 +0200 Attempt to fix Algorithm-SVM build but this has no effect --- debian/patches/fix_build_Algorithm-SVM.patch | 20 ++++++++++++++++++++ debian/patches/fix_hmmer_interface.patch | 5 +++++ debian/patches/series | 1 + 3 files changed, 26 insertions(+) diff --git a/debian/patches/fix_build_Algorithm-SVM.patch b/debian/patches/fix_build_Algorithm-SVM.patch new file mode 100644 index 0000000..08369d3 --- /dev/null +++ b/debian/patches/fix_build_Algorithm-SVM.patch @@ -0,0 +1,20 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Fri, 17 Mar 2017 10:23:15 +010 +Origin: https://rt.cpan.org/Public/Bug/Display.html?id=79754 +Description: Fix Build of code copy of Algorithm-SVM + +--- a/bio-tools-psort-svmloc/Makefile.PL ++++ b/bio-tools-psort-svmloc/Makefile.PL +@@ -1,10 +1,11 @@ + use ExtUtils::MakeMaker; ++use Config; + use lib '../lib'; + use Bio::Tools::PSort::Install; + + $CC = 'g++'; + +-%args = (); ++%args = ('CCFLAGS' => "-Wall $Config{ccflags}"); + + @libs = qw/svmloc/; + %paths = (); diff --git a/debian/patches/fix_hmmer_interface.patch b/debian/patches/fix_hmmer_interface.patch index 89dbac8..9749696 100644 --- a/debian/patches/fix_hmmer_interface.patch +++ b/debian/patches/fix_hmmer_interface.patch @@ -1,3 +1,8 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Fri, 17 Mar 2017 10:23:15 +010 +Description: Enable linking against libhmmer.a as packaged + in hmmer2 source package + --- a/algorithm-hmm/hmm-binding.cpp +++ b/algorithm-hmm/hmm-binding.cpp @@ -71,7 +71,7 @@ int HMM::load(char *filename) { diff --git a/debian/patches/series b/debian/patches/series index 86dc063..bcc14e2 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,2 +1,3 @@ biosquid_includes.patch fix_hmmer_interface.patch +fix_build_Algorithm-SVM.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/psortb.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
