This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository quorum.
commit f0ba36d7d50737ce14ab71232ef45879ddfd1550 Author: Andreas Tille <[email protected]> Date: Wed May 17 15:59:56 2017 +0200 Manual edits of help2man-generated manpages. Original output is in branch `manpages` --- debian/mans/merge_mate_pairs.1 | 6 ++++-- debian/mans/quorum.1 | 6 +++--- debian/mans/quorum_create_database.1 | 4 ++-- debian/mans/quorum_error_correct_reads.1 | 4 ++-- debian/mans/split_mate_pairs.1 | 3 +-- 5 files changed, 12 insertions(+), 11 deletions(-) diff --git a/debian/mans/merge_mate_pairs.1 b/debian/mans/merge_mate_pairs.1 index 6dc2556..292e581 100644 --- a/debian/mans/merge_mate_pairs.1 +++ b/debian/mans/merge_mate_pairs.1 @@ -1,12 +1,14 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4. .TH MERGE_MATE_PAIRS "1" "May 2017" "merge_mate_pairs 1.1.1" "User Commands" .SH NAME merge_mate_pairs \- interleave sequences from even and odd files +.SH SYNOPSIS +.B merge_mate_pairs +[options] <even_number_of_files> .SH DESCRIPTION Merge input files .PP Take an even number of files and interleave sequences from even and odd files. -.SS "Options (default value in (), *required):" +.SH OPTIONS .TP \fB\-U\fR, \fB\-\-usage\fR Usage diff --git a/debian/mans/quorum.1 b/debian/mans/quorum.1 index 55bc8e7..d875cee 100644 --- a/debian/mans/quorum.1 +++ b/debian/mans/quorum.1 @@ -1,10 +1,10 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4. .TH QUORUM "1" "May 2017" "quorum 1.1.1" "User Commands" .SH NAME quorum \- run quorum error corrector on fastq file .SH DESCRIPTION -\fI\,/usr/bin/quorum\/\fP [options] .fastq [.fastq]+ -.PP +.B quorum +[options] <fastq> [fastq] +.SH DESCRIPTION Run the quorum error corrector on the given fastq file. If the \fB\-\-paired\-files\fR switch is given, quorum expect an even number of files on the command line, each pair files containing pair end reads. The output will be two files diff --git a/debian/mans/quorum_create_database.1 b/debian/mans/quorum_create_database.1 index 0a747d1..9a3518c 100644 --- a/debian/mans/quorum_create_database.1 +++ b/debian/mans/quorum_create_database.1 @@ -1,4 +1,3 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4. .TH QUORUM_CREATE_DATABASE "1" "May 2017" "quorum_create_database 1.1.1" "User Commands" .SH NAME quorum_create_database \- create database of k-mers for quorum error corrector @@ -9,7 +8,8 @@ quorum_create_database \- create database of k-mers for quorum error corrector Create database of k\-mers for quorum error corrector .PP Create k\-mer database for quorum_error_correct -.SS "Options (default value in (), *required):" +.SH OPTIONS +default value in (), *required: .TP \fB\-s\fR, \fB\-\-size\fR=\fI\,uint64\/\fR *Initial hash size diff --git a/debian/mans/quorum_error_correct_reads.1 b/debian/mans/quorum_error_correct_reads.1 index 7b36aa3..0215d8a 100644 --- a/debian/mans/quorum_error_correct_reads.1 +++ b/debian/mans/quorum_error_correct_reads.1 @@ -1,4 +1,3 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4. .TH QUORUM_ERROR_CORRECT_READS "1" "May 2017" "quorum_error_correct_reads 1.1.1" "User Commands" .SH NAME quorum_error_correct_reads \- error correct reads from a fastq file based on the k-mer frequencies @@ -7,7 +6,8 @@ quorum_error_correct_reads \- error correct reads from a fastq file based on the [\fI\,options\/\fR] \fI\,db:path sequence:path+\/\fR .SH DESCRIPTION Error correct reads from a fastq file based on the k\-mer frequencies. -.SS "Options (default value in (), *required):" +.SH OPTIONS +default value in (), *required: .TP \fB\-t\fR, \fB\-\-thread\fR=\fI\,uint32\/\fR Number of threads (1) diff --git a/debian/mans/split_mate_pairs.1 b/debian/mans/split_mate_pairs.1 index 9fde399..6abccbf 100644 --- a/debian/mans/split_mate_pairs.1 +++ b/debian/mans/split_mate_pairs.1 @@ -1,4 +1,3 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4. .TH SPLIT_MATE_PAIRS "1" "May 2017" "split_mate_pairs 1.1.1" "User Commands" .SH NAME split_mate_pairs \- split fasta file in two @@ -6,7 +5,7 @@ split_mate_pairs \- split fasta file in two Split fasta file in two .PP Read fasta file from stdin and write sequence alternatively to two output files -.SS "Options (default value in (), *required):" +.SH OPTIONS .TP \fB\-U\fR, \fB\-\-usage\fR Usage -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/quorum.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
