This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository nanook.
commit dc656cb0ac604aa039cccac469da9e161a59c61b Author: Andreas Tille <[email protected]> Date: Fri Sep 1 15:01:09 2017 +0200 Initial packaging --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 27 +++++++++++++++++++++++++++ debian/copyright | 27 +++++++++++++++++++++++++++ debian/rules | 22 ++++++++++++++++++++++ debian/source/format | 1 + debian/upstream/metadata | 12 ++++++++++++ debian/watch | 4 ++++ 8 files changed, 99 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..a1a5488 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +nanook (1.26+dfsg-1) UNRELEASED; urgency=medium + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Fri, 01 Sep 2017 14:39:50 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..f599e28 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +10 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..603be74 --- /dev/null +++ b/debian/control @@ -0,0 +1,27 @@ +Source: nanook +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 10) +Standards-Version: 4.1.0 +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/nanook.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/nanook.git +Homepage: https://documentation.tgac.ac.uk/display/NANOOK/NanoOK + +Package: nanook +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: pre- and post-alignment analysis of nanopore sequencing data + NanoOK is a flexible, multi-reference software for pre- and post- + alignment analysis of nanopore sequencing data, quality and error + profiles. + . + NanoOK (pronounced na-nook) is a tool for extraction, alignment and + analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ + files, align them (with a choice of alignment tools), then generate a + comprehensive multi-page PDF report containing yield, accuracy and + quality analysis. Along the way, it generates plain text files which can + be used for further analysis, as well as graphs suitable for inclusion + in presentations and papers. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..582ad47 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,27 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: NanoOK +Upstream-Contact: Richard M. Leggett <[email protected]> +Source: https://github.com/TGAC/NanoOK +Files-Excluded: *.jar + +Files: * +Copyright: 2015-2017 Richard M. Leggett +License: GPL-3+ + +Files: debian/* +Copyright: 2017 Andreas Tille <[email protected]> +License: GPL-3+ + +License: GPL-3+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + On Debian systems you can find the full text of the GNU General Public + License version 3 or later at /usr/share/common-licenses/GPL-3. diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..62983db --- /dev/null +++ b/debian/rules @@ -0,0 +1,22 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 +export LC_ALL=C.UTF-8 + +include /usr/share/dpkg/default.mk +# this provides: +# DEB_SOURCE: the source package name +# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision) +# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision +# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch +# DEB_VERSION_UPSTREAM: the package's upstream version +# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog + +# for hardening you might like to uncomment this: +# export DEB_BUILD_MAINT_OPTIONS=hardening=+all + +%: + dh $@ + +#get-orig-source: +# . debian/get-orig-source diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/upstream/metadata b/debian/upstream/metadata new file mode 100644 index 0000000..c4e20f7 --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,12 @@ +Reference: + Author: Richard M. Leggett and Darren Heavens and Mario Caccamo and Matthew D. Clark and Robert P. Davey + Title: "NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles" + Journal: Bioinformatics + Year: 2016 + Volume: 32 + Number: 1 + Pages: 142-144 + DOI: 10.1093/bioinformatics/btv540 + PMID: 26382197 + URL: https://academic.oup.com/bioinformatics/article/32/1/142/1743578/NanoOK-multi-reference-alignment-analysis-of + eprint: https://academic.oup.com/bioinformatics/article-pdf/32/1/142/16920033/btv540.pdf diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..06d513c --- /dev/null +++ b/debian/watch @@ -0,0 +1,4 @@ +version=4 + +opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ + https://github.com/TGAC/NanoOK/releases .*/archive/v@ANY_VERSION@@ARCHIVE_EXT@ -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/nanook.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
