This is an automated email from the git hooks/post-receive script. tille pushed a commit to tag debian/1.0.2-1 in repository freebayes.
commit 393776126fc0270c11398abd3031f2281f766fe8 Merge: be3cf11 a0624d4 Author: Andreas Tille <[email protected]> Date: Sun Jun 18 14:47:32 2017 +0200 Merge tag 'upstream/1.1.0' Upstream version 1.1.0 .gitmodules | 9 +- README.md | 8 +- python/allelebayes.py | 2 + python/multiset.py | 2 +- scripts/bgziptabix | 13 + scripts/fasta_generate_regions.py | 2 +- scripts/freebayes-parallel | 4 +- scripts/sam_add_rg.pl | 2 +- src/Allele.h | 7 +- src/AlleleParser.cpp | 633 ++++++++++++++++++++------------- src/AlleleParser.h | 63 ++-- src/Fasta.cpp | 24 +- src/Fasta.h | 3 + src/Genotype.cpp | 2 +- src/LeftAlign.cpp | 115 +++--- src/LeftAlign.h | 94 ++++- src/Makefile | 40 ++- src/NonCall.cpp | 15 +- src/NonCall.h | 2 + src/Parameters.cpp | 8 + src/Parameters.h | 1 + src/ResultData.cpp | 56 ++- src/ResultData.h | 8 +- src/bamleftalign.cpp | 69 ++-- src/freebayes.cpp | 23 +- test/Makefile | 2 +- test/region-and-target-handling.t | 104 ------ test/t/00_region_and_target_handling.t | 145 ++++++++ test/t/01_call_variants.t | 12 +- test/t/02_multi_bam.t | 88 +++++ test/t/03_reference_bases.t | 56 +++ 31 files changed, 1066 insertions(+), 546 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/freebayes.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
