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commit 87ba1d196d66620d7fe7404a35cbc671f8daa684 Author: Andreas Tille <ti...@debian.org> Date: Sat Sep 23 09:13:48 2017 +0200 Add README.source to document binary data, upload to unstable --- debian/README.source | 125 +++++++++++++++++++++++++++++++++++++++++++++++++++ debian/changelog | 5 ++- 2 files changed, 128 insertions(+), 2 deletions(-) diff --git a/debian/README.source b/debian/README.source new file mode 100644 index 0000000..6dd364d --- /dev/null +++ b/debian/README.source @@ -0,0 +1,125 @@ +Explanation for binary files inside source package according to + http://lists.debian.org/debian-devel/2013/09/msg00332.html + +Files: data/aacost.RData +Documentation: man/aacost.Rd + Aerobic cost of amino-acids in Escherichia coli and G+C classes + +Files: data/aaindex.RData +Documentation: man/aaindex.Rd + List of 544 physicochemical and biological properties for the 20 amino-acids + +Files: data/AnoukResult.RData +Documentation: man/AnoukResult.Rd + Expected numeric results for Ka and Ks computation + +Files: data/caitab.RData +Documentation: man/caitab.Rd + Codon Adaptation Index (CAI) w tables + +Files: data/chargaff.RData +Documentation: man/chargaff.Rd + Base composition in ssDNA for 7 bacterial DNA + +Files: data/clustal.RData +Documentation: man/clustal.Rd + Example of results obtained after a call to read.alignment + +Files: data/dinucl.RData +Documentation: man/dinucl.Rd + Mean zscore on 242 complete bacterial chromosomes + +Files: data/ec999.RData +Documentation: man/ec999.Rd + 999 coding sequences from E. coli + +Files: data/ECH.RData +Documentation: man/ECH.Rd + Forensic Genetic Profile Allelic Ladder Raw Data + +Files: data/EXP.RData +Documentation: man/EXP.Rd + Vectors of coefficients to compute linear forms + +Files: data/fasta.RData +Documentation: man/fasta.Rd + Example of results obtained after a call to read.alignment + +Files: data/gcO2.rda +Documentation: man/gcO2.Rd + GC content and aerobiosis in bacteria + +Files: data/gcT.rda +Documentation: man/gcT.Rd + GC content and temperature in bacteria + +Files: data/gs500liz.RData +Documentation: man/gs500liz.Rd + GS500LIZ size standards + +Files: data/identifiler.RData +Documentation: man/identifiler.Rd + Identifiler allele names + +Files: data/JLO.RData +Documentation: man/JLO.Rd + Forensic Genetic Profile Raw Data + +Files: data/kaksTorture.RData +Documentation: man/kaks-torture.Rd + Expected numeric results for Ka and Ks in extreme cases + +Files: data/m16j.RData +Documentation: man/m16j.Rd + Fragment of the E. coli chromosome + +Files: data/mase.RData +Documentation: man/mase.Rd + Example of results obtained after a call to read.alignment + This data set gives an example of a protein alignment obtained after a call to the function read.alignment on an alignment file in "mase" format. + +Files: data/msf.RData +Documentation: man/msf.Rd + Example of results obtained after a call to read.alignment + This data set gives an example of a protein alignment obtained after a call to the function read.alignment on an alignment file in "msf" format. + +Files: data/phylip.RData +Documentation: man/phylip.Rd + Example of results obtained after a call to read.alignment + This data set gives an example of a amino acids alignment obtained after a call to the function read.alignment on an alignment file in "phylip" format. + +Files: data/pK.RData +Documentation: man/pK.Rd + pK values for the side chain of charged amino acids from various sources + +Files: data/prochlo.RData +Documentation: man/prochlo.Rd + Zscore on three strains of Prochlorococcus marinus + +Files: data/revaligntest.RData +Documentation: man/revaligntest.Rd + Three aligned nucleic acid sequences + +Files: data/SEQINR.UTIL.RData +Documentation: man/SEQINR.UTIL.Rd + This data set gives the genetics code, the name of each codon, the IUPAC + one-letter code for aminoacids and the physico-chemical class of amino + acid and the pK values of amino acids descr ibed in Bjellqvist et al. (1993) + +Files: data/sysdata.rda +Documentation: none + Probably some data dump + +Files: data/toyaa.RData +Documentation: man/toyaa.Rd + A toy example of amino-acid counts in three proteins + +Files: data/toycodon.RData +Documentation: man/toycodon.Rd + A toy example of codon counts in three coding sequences + +Files: data/waterabs.RData +Documentation: man/waterabs.Rd + Light absorption by the water column + + -- Andreas Tille <ti...@debian.org> Sat, 23 Sep 2017 08:37:51 +0200 diff --git a/debian/changelog b/debian/changelog index c1a3edf..45efeb0 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,11 +1,12 @@ -r-cran-seqinr (3.4-5-1) UNRELEASED; urgency=medium +r-cran-seqinr (3.4-5-1) unstable; urgency=medium * New upstream version * Moved packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.0 + * Add README.source to document binary data - -- Andreas Tille <ti...@debian.org> Sat, 23 Sep 2017 08:34:19 +0200 + -- Andreas Tille <ti...@debian.org> Sat, 23 Sep 2017 08:37:51 +0200 r-cran-seqinr (3.3-3-1) unstable; urgency=medium -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-seqinr.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit