This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-cran-bold.
commit f4d90ff36e9df4bff30ce486ad825ce14543ff1a Author: Andreas Tille <[email protected]> Date: Wed Mar 23 08:40:05 2016 +0000 Inject r-cran-bold --- debian/README.test | 9 +++++++++ debian/changelog | 6 ++++++ debian/compat | 1 + debian/control | 36 ++++++++++++++++++++++++++++++++++++ debian/copyright | 31 +++++++++++++++++++++++++++++++ debian/docs | 3 +++ debian/rules | 3 +++ debian/source/format | 1 + debian/tests/control | 3 +++ debian/tests/run-unit-test | 12 ++++++++++++ debian/watch | 3 +++ 11 files changed, 108 insertions(+) diff --git a/debian/README.test b/debian/README.test new file mode 100644 index 0000000..4fe93f7 --- /dev/null +++ b/debian/README.test @@ -0,0 +1,9 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + +cd tests +LC_ALL=C R --no-save < test-all.R + +in order to confirm its integrity. diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..9a49ac8 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,6 @@ +r-cran-bold (0.3.0-1) unstable; urgency=low + + * Initial release (Closes: #???) + TODO: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-httr/trunk/ + + -- Andreas Tille <[email protected]> Tue, 22 Mar 2016 21:32:09 +0100 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..3decbf5 --- /dev/null +++ b/debian/control @@ -0,0 +1,36 @@ +Source: r-cran-bold +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: gnu-r +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev, + r-cran-xml, + r-cran-stringr, + r-cran-assertthat, + r-cran-jsonlite, + r-cran-reshape, + r-cran-plyr +# r-cran-httr +Standards-Version: 3.9.7 +Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-bold/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-bold/trunk/ +Homepage: https://cran.r-project.org/web/packages/bold/ + +Package: r-cran-bold +Architecture: all +Depends: ${misc:Depends}, + ${R:Depends}, + r-cran-xml, + r-cran-stringr, + r-cran-assertthat, + r-cran-jsonlite, + r-cran-reshape, + r-cran-plyr +Description: GNU R interface to Bold Systems for genetic barcode data + A programmatic interface to the Web Service methods provided by Bold + Systems for genetic barcode data. Functions include methods for + searching by sequences by taxonomic names, ids, collectors, and + institutions; as well as a function for searching for specimens, and + downloading trace files. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..7e70062 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,31 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Contact: Scott Chamberlain <[email protected]> +Source: https://cran.r-project.org/web/packages/taxize/ + +Files: * +Copyright: 2013-2016 Scott Chamberlain <[email protected]> +License: MIT + +Files: debian/* +Copyright: 2016 Andreas Tille <[email protected]> +License: MIT + +License: MIT + Permission is hereby granted, free of charge, to any person obtaining a + copy of this software and associated documentation files (the + "Software"), to deal in the Software without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, sublicense, and/or sell copies of the Software, and to + permit persons to whom the Software is furnished to do so, subject to + the following conditions: + . + The above copyright notice and this permission notice shall be included + in all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS + OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. + IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY + CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, + TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE + SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..960011c --- /dev/null +++ b/debian/docs @@ -0,0 +1,3 @@ +tests +debian/README.test +debian/tests/run-unit-test diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..2fbba2d --- /dev/null +++ b/debian/rules @@ -0,0 +1,3 @@ +#!/usr/bin/make -f + +include /usr/share/R/debian/r-cran.mk diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..b044b0c --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @, r-cran-testthat +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..90e00dd --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,12 @@ +#!/bin/sh -e + +oname=bold +pkg=r-cran-`echo $oname | tr [A-Z] [a-z]` + +if [ "$ADTTMP" = "" ] ; then + ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +fi +cd $ADTTMP +cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP +LC_ALL=C R --no-save < test-all.R +rm -fr $ADTTMP/* diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..15076d6 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 +http://cran.r-project.org/src/contrib/bold_([-0-9\.]*).tar.gz + -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-bold.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
