This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-bioc-geneplotter.
commit 002ad7ce249e248692dc2e25b88ba8d549d5aceb Author: Andreas Tille <[email protected]> Date: Sun Jan 15 15:28:50 2017 +0100 Do not run autopkgtest which requires large database packages. Add a hint in README.test instead how users might be able to test after installing the databases manually --- debian/README.test | 4 +++- debian/changelog | 11 ++++++----- debian/tests/{control => control_do_not_run} | 0 debian/tests/run-unit-test | 10 +--------- 4 files changed, 10 insertions(+), 15 deletions(-) diff --git a/debian/README.test b/debian/README.test index 55a9142..4d72eb3 100644 --- a/debian/README.test +++ b/debian/README.test @@ -1,7 +1,9 @@ Notes on how this package can be tested. ──────────────────────────────────────── -To run the unit tests provided by the package you can do +To run the unit tests provided by the package you need to install the two +BioConductor database packages hu6800.db and hgu95av2.db manually since +these are not packaged for Debian. Once this is done you can do sh run-unit-test diff --git a/debian/changelog b/debian/changelog index aa8621a..f7927fb 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,12 +1,13 @@ -r-bioc-geneplotter (1.52.0-2) UNRELEASED; urgency=medium +r-bioc-geneplotter (1.52.0-2) unstable; urgency=medium - * Try crude hacks to strip unpackaged databases from vignettes to - safe the idea doing autopkgtests. May be its not worth the hassle - and test should be dropped at all but at least now it works. + * Team upload + * Do not run autopkgtest which requires large database packages. Add a + hint in README.test instead how users might be able to test after + installing the databases manually * debhelper 10 * d/watch: version=4 - -- Andreas Tille <[email protected]> Sun, 15 Jan 2017 15:16:12 +0100 + -- Andreas Tille <[email protected]> Sun, 15 Jan 2017 15:18:47 +0100 r-bioc-geneplotter (1.52.0-1) unstable; urgency=medium diff --git a/debian/tests/control b/debian/tests/control_do_not_run similarity index 100% rename from debian/tests/control rename to debian/tests/control_do_not_run diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test index b653388..7aa573d 100644 --- a/debian/tests/run-unit-test +++ b/debian/tests/run-unit-test @@ -4,21 +4,13 @@ pkg=r-bioc-`echo $oname | tr '[A-Z]' '[a-z]'` if [ "$ADTTMP" = "" ] ; then ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` - # trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM + trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM fi cd $ADTTMP cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP find . -name "*.gz" -exec gunzip \{\} \; -set -x for rnw in `ls *.[rRS]nw` ; do rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'` -# Database hu6800.db is not packaged so do not load it inside the test -# Dealing with hgu95av2.db is even harder - its needed in the end of visualize.Rnw -# FIXME: May be this test should be skipped at all since its not maintainable -sed -i -e '/library("hu6800.db")/d' \ - -e 's/\(VignetteDepends{Biobase, annotate, geneplotter\), hgu95av2.db/\1/' \ - -e '95,152d' \ - $rnw R --no-save <<EOT Stangle("$rnw") source("$rfile", echo=TRUE) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-geneplotter.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
