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commit 2f2250a81e51b056f45fa1ebc289aeb3d893d134 Author: Andreas Tille <[email protected]> Date: Tue Jun 28 13:16:25 2016 +0000 Document binary data files --- debian/README.source | 66 ++++++++++++++++++++++++++++++++++++++++++++++++++++ debian/README.test | 3 +-- 2 files changed, 67 insertions(+), 2 deletions(-) diff --git a/debian/README.source b/debian/README.source new file mode 100644 index 0000000..0cda4e2 --- /dev/null +++ b/debian/README.source @@ -0,0 +1,66 @@ +Explanation for binary files inside source package according to + http://lists.debian.org/debian-devel/2013/09/msg00332.html + +Files: data/H3N2.rda +Documentation: man/H3N2.Rd + Seasonal influenza (H3N2) HA segment data + These data were gathered from DNA sequences available from + Genbank (http://www.ncbi.nlm.nih.gov/Genbank/) + +Files: data/dapcIllus.rda +Documentation: man/dapcIllus.Rd + Simulated data illustrating the DAPC + Jombart, T., Devillard, S. and Balloux, F.: "Discriminant analysis of + principal components: a new method for the analysis of genetically + structured populations.", BMC genetics + +Files: data/eHGDP.rda +Documentation: man/eHGDP.Rd + Extended HGDP-CEPH dataset + Wang S, Lewis CM, Jakobsson M, Ramachandran S, Ray N, et al. + "Genetic Variation and Population Structure in Native Americans" + PLoS Genetics, 2007 3: e185. + . + This copy of the dataset was prepared by Francois Balloux. + +Files: data/microbov.rda +Documentation: man/microbov.Rd + Microsatellites genotypes of 15 cattle breeds + Data prepared by Katayoun Moazami-Goudarzi and Denis Laloë (INRA, + Jouy-en-Josas, France) + +Files: data/nancycats.rda +Documentation: man/nancycats.Rd + Microsatellites genotypes of 237 cats from 17 colonies of Nancy (France) + Dominique Pontier (UMR CNRS 5558, University Lyon1, France) + +Files: data/rupica.rda +Documentation: man/rupica.Rd + Microsatellites genotypes of 335 chamois (Rupicapra rupicapra) from the + Bauges mountains (France) + Daniel Maillard, 'Office National de la Chasse et de la Faune + Sauvage' (ONCFS), France. + +Files: data/sim2pop.rda +Documentation: man/sim2pop.Rd + Simulated genotypes of two georeferenced populations + Easypop version 2.0.1 was run with the following parameters: + - two diploid populations, one sex, random mating + - 1000 individuals per population + - proportion of migration: 0.002 + - 20 loci + - mutation rate: 0.0001 (KAM model) + - maximum of 50 allelic states + - 1000 generations (last one taken) + +Files: data/spcaIllus.rda +Documentation: man/spcaIllus.Rd + Simulated data illustrating the sPCA + Jombart, T., Devillard, S., Dufour, A.-B. and Pontier, D. + Revealing cryptic spatial patterns in genetic variability by a new + multivariate method. + Heredity, 101, 92-103 + + -- Andreas Tille <[email protected]> Tue, 28 Jun 2016 14:57:24 +0200 + + diff --git a/debian/README.test b/debian/README.test index 8d70ca3..53fb4d7 100644 --- a/debian/README.test +++ b/debian/README.test @@ -3,7 +3,6 @@ Notes on how this package can be tested. This package can be tested by running the provided test: -cd tests -LC_ALL=C R --no-save < testthat.R + sh ./run-unit-test in order to confirm its integrity. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-adegenet.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
