This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-cran-phylobase.
commit 7f2a735eeb1cd75155eb3ef18e6e7ed6f94bbe1c Author: Andreas Tille <[email protected]> Date: Wed Mar 23 10:11:39 2016 +0000 Inject r-cran-phylobase --- debian/README.test | 9 +++++++++ debian/changelog | 6 ++++++ debian/compat | 1 + debian/control | 31 +++++++++++++++++++++++++++++++ debian/copyright | 15 +++++++++++++++ debian/docs | 3 +++ debian/rules | 3 +++ debian/source/format | 1 + debian/tests/control | 3 +++ debian/tests/run-unit-test | 12 ++++++++++++ debian/watch | 3 +++ 11 files changed, 87 insertions(+) diff --git a/debian/README.test b/debian/README.test new file mode 100644 index 0000000..4fe93f7 --- /dev/null +++ b/debian/README.test @@ -0,0 +1,9 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + +cd tests +LC_ALL=C R --no-save < test-all.R + +in order to confirm its integrity. diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..11d0954 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,6 @@ +r-cran-phylobase (0.8.2-1) UNRELEASED; urgency=low + + * Initial release (Closes: #<bug>) + TODO: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rnexml/trunk/ + + -- Andreas Tille <[email protected]> Tue, 22 Mar 2016 12:05:59 +0100 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..fefb5a0 --- /dev/null +++ b/debian/control @@ -0,0 +1,31 @@ +Source: r-cran-phylobase +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: gnu-r +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev + r-cran-ape, + r-cran-ade4, + r-cran-rcpp, + r-cran-rncl, + r-cran-rnexml +Standards-Version: 3.9.7 +Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-phylobase/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-phylobase/trunk/ +Homepage: https://cran.r-project.org/web/packages/phylobase/ + +Package: r-cran-phylobase +Architecture: any +Depends: ${misc:Depends}, + ${shlibs:Depends}, + ${R:Depends}, + r-cran-ape, + r-cran-ade4, + r-cran-rncl, + r-cran-rnexml +Description: GNU R base package for phylogenetic structures and comparative data + This R package provides a base S4 class for comparative methods, + incorporating one or more trees and trait data as these are used in + other packages dealing with phylogenetic structures and comparative data. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..bd164b5 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,15 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Contact: Francois Michonneau <[email protected]> +Source: https://cran.r-project.org/web/packages/phylobase/ + +Files: * +Copyright: 2013-2015 Ben Bolker, Marguerite Butler, Peter Cowan, + Damien de Vienne, Dirk Eddelbuettel, Mark Holder, + Thibaut Jombart, Steve Kembel, Francois Michonneau, + David Orme, Brian O'Meara, Emmanuel Paradis, + Jim Regetz, Derrick Zwickl +License: GPL-2+ + +Files: debian/* +Copyright: 2016 Andreas Tille <[email protected]> +License: GPL-2+ diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..960011c --- /dev/null +++ b/debian/docs @@ -0,0 +1,3 @@ +tests +debian/README.test +debian/tests/run-unit-test diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..2fbba2d --- /dev/null +++ b/debian/rules @@ -0,0 +1,3 @@ +#!/usr/bin/make -f + +include /usr/share/R/debian/r-cran.mk diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..b044b0c --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @, r-cran-testthat +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..99bb957 --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,12 @@ +#!/bin/sh -e + +oname=phylobase +pkg=r-cran-`echo $oname | tr [A-Z] [a-z]` + +if [ "$ADTTMP" = "" ] ; then + ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +fi +cd $ADTTMP +cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP +LC_ALL=C R --no-save < test-all.R +rm -fr $ADTTMP/* diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..b077d57 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 +http://cran.r-project.org/src/contrib/phylobase_([-0-9\.]*).tar.gz + -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-phylobase.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
