This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-cran-bbmisc.
commit 30a37b07e4da7695288e0cfdf3262bdf092422de Author: Andreas Tille <[email protected]> Date: Fri Jun 13 23:08:20 2014 +0000 Add new pre-dependency for BioConductor packages --- debian/README.test | 11 +++++++++++ debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 21 +++++++++++++++++++++ debian/copyright | 42 ++++++++++++++++++++++++++++++++++++++++++ debian/docs | 3 +++ debian/rules | 7 +++++++ debian/source/format | 1 + debian/tests/control | 3 +++ debian/tests/run-unit-test | 14 ++++++++++++++ debian/watch | 2 ++ 11 files changed, 110 insertions(+) diff --git a/debian/README.test b/debian/README.test new file mode 100644 index 0000000..81df283 --- /dev/null +++ b/debian/README.test @@ -0,0 +1,11 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + +LC_ALL=C R --no-save <<EOT +library(testthat) +test_check("BBmisc") +EOT + +in order to confirm its integrity. diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..cc107d4 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +r-cran-bbmisc (1.6-1) UNRELEASED; urgency=low + + * Initial release (Closes: #) + + -- Andreas Tille <[email protected]> Fri, 13 Jun 2014 22:52:06 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..6827808 --- /dev/null +++ b/debian/control @@ -0,0 +1,21 @@ +Source: r-cran-bbmisc +Maintainer: Debian Science Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: gnu-r +Testsuite: autopkgtest +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev (>= 3.0.0) +Standards-Version: 3.9.5 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/packages/trunk/R/r-cran-bbmisc/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-bbmisc/trunk/ +Homepage: http://cran.r-project.org/web/packages/BBmisc/ + +Package: r-cran-bbmisc +Architecture: any +Depends: ${shlibs:Depends}, + ${R:Depends} +Description: GNU R Miscellaneous helper functions for B. Bischl + Miscellaneous helper functions for and from B. Bischl and some other + guys at TU Dortmund, mainly for package development. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..4744d71 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,42 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: BBmisc +Upstream-Contact: Bernd Bischl <[email protected]> +Source: http://cran.r-project.org/web/packages/BBmisc/ + +Files: * +Copyright: 2012-2014 Bernd Bischl, Michel Lang, Olaf Mersmann +License: BSD3clause + +Files: debian/* +Copyright: 2014 Andreas Tille <[email protected]> +License: BSD3clause + +License: BSD3clause + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are + met: + . + Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + . + Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in + the documentation and/or other materials provided with the + distribution. + . + Neither the name of the <ORGANIZATION> nor the names of its + contributors may be used to endorse or promote products derived + from this software without specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR + A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT + HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, + SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT + LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, + DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY + THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT + (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE + OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..960011c --- /dev/null +++ b/debian/docs @@ -0,0 +1,3 @@ +tests +debian/README.test +debian/tests/run-unit-test diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..9c63da8 --- /dev/null +++ b/debian/rules @@ -0,0 +1,7 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +include /usr/share/R/debian/r-cran.mk + +install/$(package):: + rm -rf debian/$(package)/usr/lib/R/site-library/$(cranName)/LICENSE diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..b044b0c --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @, r-cran-testthat +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..0d3767b --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,14 @@ +#!/bin/sh -e + +pkg=r-bioc-bbmisc +if [ "$ADTTMP" = "" ] ; then + ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +fi +cd $ADTTMP +cp -a /usr/share/doc/r-cran-bbmisc/tests/* $ADTTMP +gunzip -r * +LC_ALL=C R --no-save <<EOT +library(testthat) +test_check("BBmisc") +EOT +rm -f $ADTTMP/* diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..488384a --- /dev/null +++ b/debian/watch @@ -0,0 +1,2 @@ +version=3 +http://cran.r-project.org/src/contrib/BBmisc_([-\d.]*)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-bbmisc.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
