This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-bioc-annotationfilter.
commit 6754d21a91311f1a4891fa79abd06b1885adf5f9 Author: Andreas Tille <[email protected]> Date: Fri Oct 13 14:39:12 2017 +0200 Initial packaging --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 27 +++++++++++++++++++++++++++ debian/copyright | 16 ++++++++++++++++ debian/docs | 2 ++ debian/rules | 5 +++++ debian/source/format | 1 + debian/tests/control | 5 +++++ debian/tests/run-unit-test | 17 +++++++++++++++++ debian/watch | 3 +++ 10 files changed, 82 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..63de048 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +r-bioc-annotationfilter (1.0.0-1) UNRELEASED; urgency=medium + + * Initial release (closes: #xxxxxx) + + -- Andreas Tille <[email protected]> Fri, 13 Oct 2017 14:32:31 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..f599e28 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +10 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..4ee5b52 --- /dev/null +++ b/debian/control @@ -0,0 +1,27 @@ +Source: r-bioc-annotationfilter +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: gnu-r +Priority: optional +Build-Depends: debhelper (>= 10), + dh-r, + r-base-dev, + r-bioc-genomicranges, + r-cran-lazyeval +Standards-Version: 4.1.1 +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/r-bioc-annotationfilter.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/r-bioc-annotationfilter.git +Homepage: https://bioconductor.org/packages/AnnotationFilter/ + +Package: r-bioc-annotationfilter +Architecture: all +Depends: ${R:Depends}, + ${shlibs:Depends}, + ${misc:Depends} +Recommends: ${R:Recommends} +Suggests: ${R:Suggests} +Description: Facilities for Filtering Bioconductor Annotation Resources + This package provides class and other infrastructure to + implement filters for manipulating Bioconductor annotation + resources. The filters will be used by ensembldb, + Organism.dplyr, and other packages. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..5966df9 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,16 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: AnnotationFilter +Upstream-Contact: Bioconductor Maintainer <[email protected]> +Source: https://bioconductor.org/packages/AnnotationFilter/ + +Files: * +Copyright: 2016-2017 Martin Morgan, Johannes Rainer, Bioconductor Maintainer +License: Artistic-2.0 + +Files: debian/* +Copyright: 2017 Andreas Tille <[email protected]> +License: Artistic-2.0 + +License: Artistic-2.0 + On Debian systems you can find the full text of the Artistic license + at /usr/share/common-licenses/Artistic. diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..67ce40b --- /dev/null +++ b/debian/docs @@ -0,0 +1,2 @@ +debian/tests/run-unit-test +tests diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..529c38a --- /dev/null +++ b/debian/rules @@ -0,0 +1,5 @@ +#!/usr/bin/make -f + +%: + dh $@ --buildsystem R + diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..a62fb6e --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,5 @@ +Tests: run-unit-test +Depends: @, r-cran-testthat, +Restrictions: allow-stderr + + diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..8ac4179 --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,17 @@ +#!/bin/sh -e + +pkgname=AnnotationFilter +debname=r-bioc-annotationfilter + +if [ "$ADTTMP" = "" ] ; then + ADTTMP=`mktemp -d /tmp/${debname}-test.XXXXXX` + trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM +fi +cd $ADTTMP +cp -a /usr/share/doc/$debname/tests/* $ADTTMP +gunzip -r * +for testfile in *.R; do + echo "BEGIN TEST $testfile" + LC_ALL=C R --no-save < $testfile +done + diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..36feb13 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=4 +opts=downloadurlmangle=s?^(.*)\.\.?https:$1packages/release/bioc? \ +https://bioconductor.org/packages/release/bioc/html/AnnotationFilter.html .*/AnnotationFilter_(.*).tar.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-annotationfilter.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
