This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-bioc-shortread.
commit bca0e11f3b1dde56360e162606d875108af0b3b4 Author: Andreas Tille <[email protected]> Date: Sun Oct 22 19:29:58 2017 +0200 New upstream version 1.34.2 --- DESCRIPTION | 6 +++--- R/AllGenerics-Base.R | 3 +++ build/vignette.rds | Bin 261 -> 261 bytes inst/doc/Overview.pdf | Bin 133258 -> 132945 bytes 4 files changed, 6 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index a299ef2..51a8af4 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: ShortRead Type: Package Title: FASTQ input and manipulation -Version: 1.34.1 +Version: 1.34.2 Author: Martin Morgan, Michael Lawrence, Simon Anders Maintainer: Bioconductor Package Maintainer <[email protected]> @@ -14,7 +14,7 @@ Description: This package implements sampling, iteration, and input of alignment formats. License: Artistic-2.0 LazyLoad: yes -Depends: BiocGenerics (>= 0.11.3), BiocParallel, Biostrings (>= +Depends: BiocGenerics (>= 0.22.1), BiocParallel, Biostrings (>= 2.37.1), Rsamtools (>= 1.21.4), GenomicAlignments (>= 1.5.4) Imports: Biobase, S4Vectors (>= 0.13.8), IRanges (>= 2.3.7), GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.21.6), hwriter, @@ -23,4 +23,4 @@ Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi LinkingTo: S4Vectors, IRanges, XVector, Biostrings biocViews: DataImport, Sequencing, QualityControl NeedsCompilation: yes -Packaged: 2017-08-30 23:11:43 UTC; biocbuild +Packaged: 2017-10-07 22:41:16 UTC; biocbuild diff --git a/R/AllGenerics-Base.R b/R/AllGenerics-Base.R index d344908..c41e9a3 100644 --- a/R/AllGenerics-Base.R +++ b/R/AllGenerics-Base.R @@ -270,6 +270,7 @@ setGeneric("FastqFileList", function(..., class="FastqFile") standardGeneric("FastqFileList"), signature="...") +BiocGenerics:::apply_hotfix73465(getGeneric("FastqFileList")) setGeneric("FastqStreamer", function(con, n, readerBlockSize=1e8, verbose=FALSE) @@ -280,11 +281,13 @@ setGeneric("FastqStreamerList", function(..., n, readerBlockSize=1e8, verbose=FALSE) standardGeneric("FastqStreamerList"), signature="...") +BiocGenerics:::apply_hotfix73465(getGeneric("FastqStreamerList")) setGeneric("FastqSamplerList", function(..., n=1e6, readerBlockSize=1e8, verbose=FALSE, ordered = FALSE) standardGeneric("FastqSamplerList"), signature="...") +BiocGenerics:::apply_hotfix73465(getGeneric("FastqSamplerList")) setGeneric("yield", function(x, ...) standardGeneric("yield")) diff --git a/build/vignette.rds b/build/vignette.rds index 9d87be1..0710548 100644 Binary files a/build/vignette.rds and b/build/vignette.rds differ diff --git a/inst/doc/Overview.pdf b/inst/doc/Overview.pdf index 6981d77..ce01005 100644 Binary files a/inst/doc/Overview.pdf and b/inst/doc/Overview.pdf differ -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-shortread.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
