This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository r-cran-pscbs.
from 9fd2d72 New upstream version 0.62.0
new 6e6d7e1 New upstream version 0.63.0
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 26 +-
INSTALL.md | 3 +-
NAMESPACE | 10 +-
NEWS | 3611 ++++++++++++++++++++++------------
R/CBS.CALL.R | 3 -
R/CBS.R | 2 +-
R/NonPairedPSCBS.R | 2 +-
R/PSCBS.isLocallyPhased.R | 12 +
R/PairedPSCBS.R | 4 +-
R/PairedPSCBS.callCopyNeutral.R | 69 +-
R/PairedPSCBS.estimateKappa.R | 3 -
R/callSegmentationOutliers.R | 4 -
R/findNeutralCopyNumberState.R | 4 -
R/segmentByCBS.R | 5 -
R/segmentByNonPairedPSCBS.R | 1 -
R/segmentByPairedPSCBS.R | 4 +-
R/zzz.R | 64 +-
README.md | 10 +-
appveyor.yml | 11 +-
cran-comments.md | 54 +-
incl/999.missingdocs.txt | 2 +
man/Non-documented_objects.Rd | 2 +
man/NonPairedPSCBS.Rd | 2 +-
man/PSCBS.Rd | 1 +
man/PairedPSCBS.Rd | 2 +-
man/estimateDeltaCN.PairedPSCBS.Rd | 6 +-
revdep/README.md | 89 +-
revdep/problems.md | 28 +-
revdep/timing.md | 22 +-
tests/segmentByCBS,futures.R | 10 +-
tests/segmentByPairedPSCBS,futures.R | 4 +-
31 files changed, 2592 insertions(+), 1478 deletions(-)
create mode 100644 R/PSCBS.isLocallyPhased.R
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