This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository kraken.
commit 8c59a8d60a1799dad9124291d16168f5bd767ea0 Merge: 0321be8 1e43ce8 Author: Andreas Tille <[email protected]> Date: Mon Nov 13 16:33:31 2017 +0100 Update upstream source from tag 'upstream/1.0' Update to upstream version '1.0' with Debian dir 56229c2206797bd9bd81aaa95fad4c630a757db6 CHANGELOG | 5 ++ docs/MANUAL.html | 116 ++++++++++++++--------------- docs/MANUAL.markdown | 60 ++++++++------- docs/top.html | 2 +- install_kraken.sh | 7 +- scripts/add_to_library.sh | 34 ++++++--- scripts/build_kraken_db.sh | 49 +++++++------ scripts/convert_gb_to_fa.pl | 58 +++++++++++++++ scripts/cp_into_tempfile.pl | 2 +- scripts/download_genomic_library.sh | 120 +++++++++++------------------- scripts/download_taxonomy.sh | 46 +++++------- scripts/kraken | 2 +- scripts/kraken-build | 10 +-- scripts/kraken-filter | 2 +- scripts/kraken-mpa-report | 2 +- scripts/kraken-report | 9 ++- scripts/kraken-translate | 2 +- scripts/krakenlib.pm | 29 +++++++- scripts/lookup_accession_numbers.pl | 65 +++++++++++++++++ scripts/read_merger.pl | 2 +- scripts/report_gi_numbers.pl | 2 +- scripts/rsync_from_ncbi.pl | 134 ++++++++++++++++++++++++++++++++++ scripts/scan_fasta_file.pl | 50 +++++++++++++ scripts/standard_installation.sh | 5 +- scripts/verify_gi_numbers.pl | 2 +- src/Makefile | 4 +- src/classify.cpp | 22 ++++-- src/db_shrink.cpp | 8 +- src/db_sort.cpp | 8 +- src/kmer_estimator.cpp | 141 ++++++++++++++++++++++++++++++++++++ src/set_lcas.cpp | 28 +++++-- 31 files changed, 761 insertions(+), 265 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/kraken.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
