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commit 2dc0368ed1e114d179048dc81141e1ee0ba9cb12 Merge: 6d8f7b6 3df5410 Author: Andreas Tille <ti...@debian.org> Date: Fri Dec 1 10:04:49 2017 +0100 Merge branch 'minia2' .gitignore | 1 + .gitmodules | 3 + Bank.cpp | 1087 ----- Bank.h | 200 - Bloom.cpp | 474 -- Bloom.h | 248 - CMakeLists.txt | 119 + Debloom.cpp | 466 -- Debloom.h | 45 - GraphOutput.cpp | 380 -- GraphOutput.h | 204 - Hash16.cpp | 404 -- Hash16.h | 95 - Hashing.cpp | 42 - Hashing.h | 31 - INSTALL | 20 + Kmer.cpp | 373 -- Kmer.h | 84 - LICENSE | 1175 +++-- LargeInt.cpp | 277 -- LargeInt.h | 48 - LinearCounter.cpp | 47 - LinearCounter.h | 29 - Minia.cpp | 351 -- MultiConsumer.cpp | 144 - MultiConsumer.h | 86 - OAHash.cpp | 212 - OAHash.h | 77 - Pool.cpp | 156 - Pool.h | 92 - README | 18 - README.md | 38 + Set.cpp | 305 -- Set.h | 158 - SortingCount.cpp | 847 ---- SortingCount.h | 27 - Terminator.cpp | 410 -- Terminator.h | 79 - Traversal.cpp | 955 ---- Traversal.h | 168 - Utils.cpp | 647 --- Utils.h | 103 - debian/changelog | 9 + debian/control | 4 +- debian/patches/add_hardening | 34 - debian/patches/series | 1 - doc/CMakeLists.txt | 13 + doc/manual.tex | 142 + lut.h | 272 -- makefile | 76 - manual/manual.pdf | Bin 1155669 -> 0 bytes manual/manual.tex | 124 - rvalues.h | 131 - simple_test.sh | 20 - src/Minia.cpp | 296 ++ src/Minia.hpp | 61 + src/NodeSelector.cpp | 244 + src/NodeSelector.hpp | 125 + src/main.cpp | 50 + test/read50x_ref10K_e001.fasta | 10000 --------------------------------------- test/result10K.fasta | 2 - ttmath/ttmath.h | 2849 ----------- ttmath/ttmathbig.h | 6061 ------------------------ ttmath/ttmathint.h | 1924 -------- ttmath/ttmathmisc.h | 250 - ttmath/ttmathobjects.h | 809 ---- ttmath/ttmathparser.h | 2765 ----------- ttmath/ttmaththreads.h | 250 - ttmath/ttmathtypes.h | 667 --- ttmath/ttmathuint.h | 4062 ---------------- ttmath/ttmathuint_noasm.h | 1017 ---- ttmath/ttmathuint_x86.h | 1602 ------- ttmath/ttmathuint_x86_64.h | 1146 ----- 73 files changed, 1785 insertions(+), 43946 deletions(-) diff --cc debian/control index 6675062,c191ae2..6dae2cb --- a/debian/control +++ b/debian/control @@@ -4,9 -5,10 +5,10 @@@ Uploaders: Olivier Sallou <osallou@debi Section: science Priority: optional Build-Depends: debhelper (>= 10), + cmake, bc, zlib1g-dev -Standards-Version: 4.0.0 +Standards-Version: 4.1.1 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/minia.git Vcs-Git: https://anonscm.debian.org/git/debian-med/minia.git Homepage: http://minia.genouest.org/ -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/minia.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit