This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository gatb-core.
commit e8e7b72dda8f873cdb9912eb9c902cf82ee9c781 Author: Andreas Tille <[email protected]> Date: Thu Dec 14 09:37:51 2017 +0100 Fix some spelling issues --- debian/patches/series | 1 + debian/patches/spelling.patch | 62 +++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 63 insertions(+) diff --git a/debian/patches/series b/debian/patches/series index 63565fd..20a2787 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -5,3 +5,4 @@ fix_install_location.patch set_soversion.patch dynamic_linking_of_tools.patch multiarch.patch +spelling.patch diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch new file mode 100644 index 0000000..b76eee3 --- /dev/null +++ b/debian/patches/spelling.patch @@ -0,0 +1,62 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Tue, 28 Nov 2017 10:37:22 +0100 +Description: Fix spelling issues + +--- a/gatb-core/src/gatb/tools/compression/DnaCoder.cpp ++++ b/gatb-core/src/gatb/tools/compression/DnaCoder.cpp +@@ -647,7 +647,7 @@ void DnaEncoder::encodeAnchorRead(int an + //CompressionUtils::encodeNumeric(_rangeEncoder, _isPrevReadAnchorablePosModel, _isPrevReadAnchorablePos); + //} + //_prevAnchorAddress = anchorAddress; +- //printf("anchor adress %i \n",anchorAddress); ++ //printf("anchor address %i \n",anchorAddress); + + + kmer_type anchor = _kmers[anchorPos]; +@@ -1491,7 +1491,7 @@ void DnaDecoder::decodeAnchorRead(){ + #ifdef PRINT_DEBUG_DECODER + cout << "\t\t\tRead size: " << _readSize << endl; + cout << "\t\t\tAnchor pos: " << anchorPos << endl; +- cout << "\t\t\tAnchor adress: " << anchorAddress << endl; ++ cout << "\t\t\tAnchor address: " << anchorAddress << endl; + cout << "\t\t\tAnchor: " << anchor.toString(_kmerSize) << endl; + #endif + +--- a/gatb-core/src/gatb/tools/compression/Leon.cpp ++++ b/gatb-core/src/gatb/tools/compression/Leon.cpp +@@ -996,7 +996,7 @@ void Leon::endDnaCompression(){ + + u_int64_t readsSize = _anchorAdressSize+_anchorPosSize+_readSizeSize+_bifurcationSize+_otherSize; + getInfo()->add(2, "Reads", "%.2f (%u)", ((readsSize*100) / (double)_compressedSize), readsSize); +- getInfo()->add(3, "Anchor adress", "%.2f (%u)", ((_anchorAdressSize*100) / (double)_compressedSize), _anchorAdressSize); ++ getInfo()->add(3, "Anchor address", "%.2f (%u)", ((_anchorAdressSize*100) / (double)_compressedSize), _anchorAdressSize); + getInfo()->add(3, "Anchor pos", "%.2f (%u)", ((_anchorPosSize*100) / (double)_compressedSize), _anchorPosSize); + getInfo()->add(3, "Read size", "%.2f (%u)", ((_readSizeSize*100) / (double)_compressedSize), _readSizeSize); + getInfo()->add(3, "Bifurcation", "%.2f (%u)", ((_bifurcationSize*100) / (double)_compressedSize), _bifurcationSize); +--- a/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp ++++ b/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp +@@ -1276,13 +1276,13 @@ unsigned char GraphUnitigsTemplate<span> + template<size_t span> + void GraphUnitigsTemplate<span>::countNeighbors (const NodeGU &source, size_t &in, size_t &out) const + { +- std::cout << "GraphU countNeighbors source,in,out not implememented" << std::endl;exit(1); ++ std::cout << "GraphU countNeighbors source,in,out not implemented" << std::endl;exit(1); + } + + template<size_t span> + NodeGU GraphUnitigsTemplate<span>::getNode (const NodeGU& source, Direction dir, kmer::Nucleotide nt, bool& exists) const + { +- std::cout << "GraphU getNode source,dir,nt,exists not implememented" << std::endl;exit(1); ++ std::cout << "GraphU getNode source,dir,nt,exists not implemented" << std::endl;exit(1); + return NodeGU(); + } + +@@ -1899,7 +1899,7 @@ debugBuildNode(string startKmer) const + } + } + } +- std::cout << "could not build node correspoding to kmer" << startKmer << ", it's not an unitig end." << std::endl; ++ std::cout << "could not build node corresponding to kmer" << startKmer << ", it's not an unitig end." << std::endl; + exit(1); + } + -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gatb-core.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
