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commit a19bffbf084d223be3f5e831ce3f0f38ce529c93 Merge: 13d3da4 cdd09b1 Author: Andreas Tille <[email protected]> Date: Sun Dec 24 23:37:44 2017 +0100 Merge tag 'upstream/0.8.1' Upstream version 0.8.1 AUTHORS | 21 + COPYING | 463 + ChangeLog | 0 HACKING | 231 + INSTALL | 105 + Makefile.am | 7 + Makefile.in | 428 + NEWS | 73 + README | 73 + acinclude.m4 | 304 + aclocal.m4 | 1140 ++ btk/Makefile.am | 1 + btk/Makefile.in | 322 + btk/core/Makefile.am | 100 + btk/core/Makefile.in | 630 + btk/core/algorithms/predicates.hpp | 152 + btk/core/algorithms/properties.hpp | 89 + btk/core/algorithms/rmsd.cpp | 134 + btk/core/algorithms/rmsd.hpp | 647 + btk/core/algorithms/selections.hpp | 77 + btk/core/algorithms/transforms.hpp | 212 + btk/core/atoms/atom.hpp | 279 + btk/core/atoms/default_atom_dictionary.hpp | 37 + btk/core/atoms/pdb_atom.hpp | 38 + btk/core/atoms/pdb_atom_decorator.hpp | 282 + btk/core/common/assertions.cpp | 70 + btk/core/common/assertions.hpp | 84 + btk/core/common/debugging.hpp | 51 + btk/core/common/exceptions.hpp | 115 + btk/core/concepts/atom_concept.hpp | 299 + btk/core/concepts/atom_iterable_concept.hpp | 258 + btk/core/concepts/atom_iterator_concept.hpp | 94 + btk/core/concepts/atomic_structure_concept.hpp | 232 + btk/core/concepts/btk_container_concept.hpp | 49 + btk/core/concepts/chain_concept.hpp | 49 + btk/core/concepts/chain_iterable_concept.hpp | 90 + btk/core/concepts/chain_iterator_concept.hpp | 55 + btk/core/concepts/chemically_typed_concept.hpp | 324 + btk/core/concepts/monomer_concept.hpp | 89 + btk/core/concepts/monomer_iterable_concept.hpp | 90 + btk/core/concepts/monomer_iterator_concept.hpp | 55 + btk/core/concepts/polymer_structure_concept.hpp | 87 + btk/core/concepts/system_concept.hpp | 77 + btk/core/concepts/type_id_concept.hpp | 47 + btk/core/concepts/type_system_concept.hpp | 82 + btk/core/config/btk_config.hpp | 112 + btk/core/config/btk_core_config.h | 121 + btk/core/config/config.h.in | 65 + btk/core/config/depcomp | 436 + btk/core/config/install-sh | 251 + btk/core/config/missing | 336 + btk/core/config/mkinstalldirs | 101 + btk/core/elements/default_element_dictionary.cpp | 154 + btk/core/elements/default_element_dictionary.hpp | 50 + btk/core/elements/element_types.hpp | 200 + btk/core/io/cached_logger.cpp | 45 + btk/core/io/cached_logger.hpp | 74 + btk/core/io/default_type_system.hpp | 84 + btk/core/io/dictionary.hpp | 207 + btk/core/io/filter_logger.hpp | 60 + btk/core/io/logger.cpp | 51 + btk/core/io/logger.hpp | 114 + btk/core/io/logger_level.hpp | 124 + btk/core/io/logger_stream.hpp | 84 + btk/core/io/logging.hpp | 55 + btk/core/io/pdb_file_parser.hpp | 765 + btk/core/io/pdb_system.hpp | 166 + btk/core/io/type_system.hpp | 97 + btk/core/io/type_system_proxy.hpp | 133 + btk/core/math/btk_matrix.hpp | 93 + btk/core/math/btk_vector.hpp | 99 + btk/core/math/common_functions.hpp | 76 + btk/core/math/constants.hpp | 46 + btk/core/math/linear_algebra.cpp | 149 + btk/core/math/linear_algebra.hpp | 140 + btk/core/math/rotation.cpp | 97 + btk/core/math/rotation.hpp | 115 + btk/core/math/vector_math.cpp | 74 + btk/core/math/vector_math.hpp | 115 + btk/core/molecules/atomic_structure.hpp | 254 + btk/core/molecules/chain.hpp | 146 + btk/core/molecules/default_monomer_dictionary.hpp | 34 + .../molecules/default_structure_dictionary.hpp | 34 + btk/core/molecules/molecule.hpp | 138 + btk/core/molecules/monomer.hpp | 181 + btk/core/molecules/polymer.hpp | 312 + btk/core/molecules/polymer_structure.hpp | 227 + btk/core/molecules/system.hpp | 357 + btk/core/molecules/system_base.hpp | 189 + btk/core/utility/btk_container.hpp | 198 + btk/core/utility/btk_sequence.hpp | 111 + btk/core/utility/chemically_typed_object.hpp | 158 + btk/core/utility/grouped_element_iterator.hpp | 382 + btk/core/utility/type_id.hpp | 110 + btk/core/utility/type_id_traits.hpp | 67 + configure | 5705 ++++++++ configure.ac | 50 + debian/changelog | 24 - debian/compat | 1 - debian/control | 24 - debian/copyright | 29 - debian/docs | 3 - debian/libbtk-core-dev.examples | 3 - debian/libbtk-core-dev.install | 2 - debian/patches/00list | 2 - debian/patches/100-Makefile.am.dpatch | 16 - debian/patches/100-btk_core_Makefile.am.dpatch | 31 - debian/rmsd.1 | 53 - debian/rules | 94 - debian/transform_structure.1 | 22 - debian/watch | 3 - examples/Makefile.am | 9 + examples/Makefile.in | 358 + examples/contact_order.cpp | 87 + examples/gyration_radius.cpp | 74 + examples/rmsd.cpp | 306 + examples/transform_structure.cpp | 86 + tests/Makefile.am | 45 + tests/Makefile.in | 516 + tests/atomic_structure_tests.hpp | 129 + tests/btk_container_tests.hpp | 173 + tests/chain_tests.hpp | 42 + tests/multi_model_test.pdb | 13791 +++++++++++++++++++ tests/polymer_structure_tests.hpp | 113 + tests/system_tests.hpp | 136 + tests/test.pdb | 1417 ++ tests/test.short.pdb | 33 + tests/test_atoms.cpp | 155 + tests/test_btk_container.cpp | 58 + tests/test_common.hpp | 59 + tests/test_dictionary.cpp | 85 + tests/test_grouped_iterator.cpp | 160 + tests/test_molecule.cpp | 61 + tests/test_monomer.cpp | 60 + tests/test_pdb_output.cpp | 99 + tests/test_pdb_system.cpp | 231 + tests/test_polymer.cpp | 32 + tests/test_system.cpp | 54 + tests/test_vector_geometry.cpp | 67 + 139 files changed, 40120 insertions(+), 307 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/btk-core.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
