This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libgoby-java.
commit d3ad123f81b28fe743d78e49a16046077e307967 Author: Andreas Tille <[email protected]> Date: Tue Dec 18 16:41:41 2012 +0000 When trying to upgrade the package igv I noticed goby which might be worth packaging on its own --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 28 ++++++++++++++++++++++++++++ debian/copyright | 27 +++++++++++++++++++++++++++ debian/rules | 6 ++++++ debian/source/format | 1 + debian/watch | 2 ++ 7 files changed, 70 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..3bdb978 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +goby-framework (2.1.1-1) UNRELEASED; urgency=low + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Tue, 18 Dec 2012 17:11:24 +0100 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..72e7ea6 --- /dev/null +++ b/debian/control @@ -0,0 +1,28 @@ +Source: goby-framework +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.4 +Homepage: <homepage> +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/goby-framework/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/goby-framework/trunk/ + +Package: libgoby-java +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: store next-generation sequencing data and intermediary analysis results + Goby is a next-gen data management framework designed to facilitate the + implementation of efficient data analysis pipelines. + . + Goby provides very efficient file formats to store next-generation + sequencing data and intermediary analysis results. Goby 1.x files were + compressed with GZip. In Goby 2.0, we introduced novel compression + approaches that result in state of the art compression of alignment + data. Goby 2.0 files can compress to a few percent of a BAM file and are + often smaller than CRAM files. + . + Goby also provides utilities that implement common next-gen data + computations. We design these utilities to make them relatively easy to + use, yet very efficient. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..b3deeae --- /dev/null +++ b/debian/copyright @@ -0,0 +1,27 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: Goby +Upstream-Contact: [email protected] +Source: http://chagall.med.cornell.edu/goby/releases/archive/ + https://github.com/CampagneLaboratory/goby/tags + +Files: * +Copyright: © 20xx-20yy <upstream> +License: GPL-3 + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: GPL-3 + +License: GPL-3 + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + On Debian systems you can find the full text of the GPL3 at + /usr/share/common-licenses/GPL-3 \ No newline at end of file diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..6055261 --- /dev/null +++ b/debian/rules @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..cf9737b --- /dev/null +++ b/debian/watch @@ -0,0 +1,2 @@ +version=3 +https://github.com/CampagneLaboratory/goby/tags .*/(\d[\d\.]+)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/libgoby-java.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
