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commit 3fbd4c2a828fa4dfdfdf849b2a741e4601c3d1b8 Author: Charles Plessy <[email protected]> Date: Mon Apr 14 02:04:55 2008 +0000 [svn-inject] Applying Debian modifications to trunk --- debian/README.Debian | 6 ++++ debian/TODO | 41 +++++++++++++++++++++++ debian/changelog | 6 ++++ debian/compat | 1 + debian/control | 19 +++++++++++ debian/copyright | 24 +++++++++++++ debian/cron.d.ex | 4 +++ debian/dirs | 2 ++ debian/docs | 3 ++ debian/examples | 1 + debian/menu.ex | 2 ++ debian/patches/add-binaries-to-make-install.patch | 14 ++++++++ debian/patches/series | 1 + debian/rules | 5 +++ debian/tab2mage-default.ex | 10 ++++++ debian/tab2mage.doc-base.EX | 22 ++++++++++++ debian/watch.ex | 22 ++++++++++++ 17 files changed, 183 insertions(+) diff --git a/debian/README.Debian b/debian/README.Debian new file mode 100644 index 0000000..46b5702 --- /dev/null +++ b/debian/README.Debian @@ -0,0 +1,6 @@ +tab2mage for Debian +------------------- + +<possible notes regarding this package - if none, delete this file> + + -- Charles Plessy <[email protected]> Fri, 11 Apr 2008 10:55:53 +0900 diff --git a/debian/TODO b/debian/TODO new file mode 100644 index 0000000..19e2b58 --- /dev/null +++ b/debian/TODO @@ -0,0 +1,41 @@ +t/creator...............ok + 1/1 skipped: Class::DBI not installed +t/daemon................ok + 1/1 skipped: MIME::Lite, Archive::Any or Class::DBI not installed +t/daemon_checker........ok + 3/3 skipped: Parent class ArrayExpress::AutoSubmission::Daemon not available. +t/daemon_exporter.......ok + 3/3 skipped: Parent class ArrayExpress::AutoSubmission::Daemon not available. +t/daemon_mxchecker......ok + 1/1 skipped: DBD::mysql not installed, or ArrayExpress::Curator::Daemon superclass unavailable. +t/daemon_mxexporter.....ok + 1/1 skipped: DBD::mysql not installed, or ArrayExpress::Curator::Daemon superclass unavailable. +t/data_metrics..........ok +t/database..............ok +t/datafile..............ok + 15/142 skipped: Test::Exception not installed +t/datafile_parser.......ok +t/db....................ok + 31/31 skipped: Class::DBI not installed +t/entrez_list...........ok +t/experiment_checker....ok +t/fgem..................ok +t/logger................ok +t/mage..................ok +t/mage_defs.............ok +t/magetab...............ok +t/magetab_checker.......ok +t/magetab_datamatrix....ok +t/magetab_idf...........ok +t/magetab_sdrf..........ok +t/magetab_tabfile.......ok +t/miamexpress...........ok + 1/1 skipped: DBI and/or DBD::mysql not installed +t/qt_list...............ok +t/report................ok +t/spreadsheet...........ok + 1/1 skipped: Class::DBI not installed +t/standalone............ok +t/tab2mage..............ok +t/tracking..............ok + 2/2 skipped: Date::Manip not installed diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..f7dd1da --- /dev/null +++ b/debian/changelog @@ -0,0 +1,6 @@ +tab2mage (20080110-1) unstable; urgency=low + + * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + + -- Charles Plessy <[email protected]> Fri, 11 Apr 2008 10:55:53 +0900 + diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..7ed6ff8 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +5 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..aedcec0 --- /dev/null +++ b/debian/control @@ -0,0 +1,19 @@ +Source: tab2mage +Section: unknown +Priority: extra +Maintainer: Charles Plessy <[email protected]> +Build-Depends: cdbs, quilt, debhelper (>= 5) +Standards-Version: 3.7.2 + +Package: tab2mage +Architecture: all +Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, + libbio-mage-perl, libbio-mage-utils-perl, libwww-perl, + libtie-ixhash-perl, liblist-moreutils-perl, + libtext-csv-perl, libreadonly-xs-perl, libconfig-yaml-perl, + libclass-std-perl, libparse-recdescent-perl + libxml-xerces-perl +Recommends: libdbi-perl, libdbd-mysql-perl +Suggests: graphviz +Description: <insert up to 60 chars description> + <insert long description, indented with spaces> diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..0cdf2ac --- /dev/null +++ b/debian/copyright @@ -0,0 +1,24 @@ +This package was debianized by Charles Plessy <[email protected]> on +Fri, 11 Apr 2008 10:55:53 +0900. + +It was downloaded from <url://example.com> + +Upstream Author(s): + + <put author's name and email here> + <likewise for another author> + +Copyright: + + <Copyright (C) YYYY Name OfAuthor> + <likewise for another author> + +License: + + <Put the license of the package here indented by 4 spaces> + +The Debian packaging is (C) 2008, Charles Plessy <[email protected]> and +is licensed under the GPL, see `/usr/share/common-licenses/GPL'. + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. diff --git a/debian/cron.d.ex b/debian/cron.d.ex new file mode 100644 index 0000000..72ae0ca --- /dev/null +++ b/debian/cron.d.ex @@ -0,0 +1,4 @@ +# +# Regular cron jobs for the tab2mage package +# +0 4 * * * root tab2mage_maintenance diff --git a/debian/dirs b/debian/dirs new file mode 100644 index 0000000..ca882bb --- /dev/null +++ b/debian/dirs @@ -0,0 +1,2 @@ +usr/bin +usr/sbin diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..68eda78 --- /dev/null +++ b/debian/docs @@ -0,0 +1,3 @@ +docs/* +MAGETAB.txt +README diff --git a/debian/examples b/debian/examples new file mode 100644 index 0000000..e39721e --- /dev/null +++ b/debian/examples @@ -0,0 +1 @@ +examples/* diff --git a/debian/menu.ex b/debian/menu.ex new file mode 100644 index 0000000..79d910f --- /dev/null +++ b/debian/menu.ex @@ -0,0 +1,2 @@ +?package(tab2mage):needs="X11|text|vc|wm" section="Applications/see-menu-manual"\ + title="tab2mage" command="/usr/bin/tab2mage" diff --git a/debian/patches/add-binaries-to-make-install.patch b/debian/patches/add-binaries-to-make-install.patch new file mode 100644 index 0000000..527371a --- /dev/null +++ b/debian/patches/add-binaries-to-make-install.patch @@ -0,0 +1,14 @@ +Index: tab2mage-20080110/Makefile.PL +=================================================================== +--- tab2mage-20080110.orig/Makefile.PL 2008-04-14 10:22:36.000000000 +0900 ++++ tab2mage-20080110/Makefile.PL 2008-04-14 10:23:23.000000000 +0900 +@@ -40,6 +40,9 @@ + bin/magetab.pl + bin/expt_check.pl + bin/convert_to_mcmr.pl ++ bin/mx_add_affy.pl ++ bin/parse_affy.pl ++ bin/t2m_visualize.pl + ); + my @LIBS = qw(xerces-c); + diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 0000000..68a745e --- /dev/null +++ b/debian/patches/series @@ -0,0 +1 @@ +add-binaries-to-make-install.patch diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..4e02705 --- /dev/null +++ b/debian/rules @@ -0,0 +1,5 @@ +#!/usr/bin/make -f + +include /usr/share/cdbs/1/rules/patchsys-quilt.mk +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/class/perlmodule.mk diff --git a/debian/tab2mage-default.ex b/debian/tab2mage-default.ex new file mode 100644 index 0000000..66323c0 --- /dev/null +++ b/debian/tab2mage-default.ex @@ -0,0 +1,10 @@ +# Defaults for tab2mage initscript +# sourced by /etc/init.d/tab2mage +# installed at /etc/default/tab2mage by the maintainer scripts + +# +# This is a POSIX shell fragment +# + +# Additional options that are passed to the Daemon. +DAEMON_OPTS="" diff --git a/debian/tab2mage.doc-base.EX b/debian/tab2mage.doc-base.EX new file mode 100644 index 0000000..de3b0a0 --- /dev/null +++ b/debian/tab2mage.doc-base.EX @@ -0,0 +1,22 @@ +Document: tab2mage +Title: Debian tab2mage Manual +Author: <insert document author here> +Abstract: This manual describes what tab2mage is + and how it can be used to + manage online manuals on Debian systems. +Section: unknown + +Format: debiandoc-sgml +Files: /usr/share/doc/tab2mage/tab2mage.sgml.gz + +Format: postscript +Files: /usr/share/doc/tab2mage/tab2mage.ps.gz + +Format: text +Files: /usr/share/doc/tab2mage/tab2mage.text.gz + +Format: HTML +Index: /usr/share/doc/tab2mage/html/index.html +Files: /usr/share/doc/tab2mage/html/*.html + + diff --git a/debian/watch.ex b/debian/watch.ex new file mode 100644 index 0000000..91ad073 --- /dev/null +++ b/debian/watch.ex @@ -0,0 +1,22 @@ +# Example watch control file for uscan +# Rename this file to "watch" and then you can run the "uscan" command +# to check for upstream updates and more. +# See uscan(1) for format + +# Compulsory line, this is a version 3 file +version=3 + +# Uncomment to examine a Webpage +# <Webpage URL> <string match> +#http://www.example.com/downloads.php tab2mage-(.*)\.tar\.gz + +# Uncomment to examine a Webserver directory +#http://www.example.com/pub/tab2mage-(.*)\.tar\.gz + +# Uncommment to examine a FTP server +#ftp://ftp.example.com/pub/tab2mage-(.*)\.tar\.gz debian uupdate + +# Uncomment to find new files on sourceforge, for devscripts >= 2.9 +# http://sf.net/tab2mage/tab2mage-(.*)\.tar\.gz + + -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/tab2mage.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
