This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository bedtools.
commit 251689c959f2f2e4deec60e9eb85215ee3a5acd9 Author: Andreas Tille <[email protected]> Date: Sat Feb 10 09:58:31 2018 +0100 Random failure patch seems to be unneeded. --- .../do_not_let_random_failure_tests_fail.patch | 68 ---------------------- debian/patches/series | 1 - 2 files changed, 69 deletions(-) diff --git a/debian/patches/do_not_let_random_failure_tests_fail.patch b/debian/patches/do_not_let_random_failure_tests_fail.patch deleted file mode 100644 index 3013aba..0000000 --- a/debian/patches/do_not_let_random_failure_tests_fail.patch +++ /dev/null @@ -1,68 +0,0 @@ -Author: Andreas Tille <[email protected]> -Last-Update: Sat, 14 Jan 2017 16:10:04 +0100 -Bug-Debian: https://bugs.debian.org/747337 -Description: Ignore failures in the split feature for the moment -Remark: This patch is deactivated since the upstream test suite changed but - may be we need some reference to what tests needed exclusion and - thus it is left here for the moment - ---- a/test/test.sh -+++ b/test/test.sh -@@ -67,8 +67,8 @@ cd subtract; bash test-subtract.sh; cd . - echo " Testing bedtools sample:" - cd sample; bash test-sample.sh; cd .. - --echo " Testing bedtools split:" --cd split; bash test-split.sh; cd .. -+echo " Testing bedtools split: FIXME: This test is known to be broken and will be ignored by the Debian autopkgtest" -+cd split; bash test-split.sh || true ; cd .. - - echo " Testing bedtools spacing:" - cd spacing; bash test-spacing.sh; cd .. ---- a/test/split/test-split.sh -+++ b/test/split/test-split.sh -@@ -10,6 +10,17 @@ check() - fi - } - -+ignore_failure() -+{ -+ if diff $1 $2; then -+ echo ok -+ return 1 -+ else -+ echo failure will be ignored -+ return 1 -+ fi -+} -+ - cat /dev/zero |tr "\0" "\n" | head -n 10000 |\ - awk '{S=int(rand()*1000.0);E=S+int(rand()*100000); printf("chrX\t%d\t%d\n",S,E);}' > tmp.bed - -@@ -26,7 +37,7 @@ _tmp.00008.bed 9943487 200 - _tmp.00009.bed 9943539 200 - _tmp.00010.bed 9943531 200" > exp - ${BT} split -i tmp.bed -p _tmp -n 50 -a size | head > _tmp.size.tsv --check exp _tmp.size.tsv -+ignore_failure exp _tmp.size.tsv - - - echo " split.02.simple...\c" -@@ -42,7 +53,7 @@ _tmp.00008.bed 9781861 200 - _tmp.00009.bed 9502188 200 - _tmp.00010.bed 9991229 200" > exp - ${BT} split -i tmp.bed -p _tmp -n 50 -a simple | head > _tmp.simple.tsv --check exp _tmp.simple.tsv -+ignore_failure exp _tmp.simple.tsv - - echo " spliit.03.simple...\c" - rm -f _tmp.*.bed -@@ -57,7 +68,7 @@ _tmp.00008.bed 555258 10 - _tmp.00009.bed 474511 10 - _tmp.00010.bed 633012 10" > exp - ${BT} split -i tmp.bed -p _tmp -n 1000 -a simple | head > _tmp.simple.tsv --check exp _tmp.simple.tsv -+ignore_failure exp _tmp.simple.tsv - - - diff --git a/debian/patches/series b/debian/patches/series index 3a40b3d..84290f3 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -3,4 +3,3 @@ fix_test_script.patch remove_barski_binding_site.png.patch reproducible_build.patch v2.26.0-19-g6bf23c4.patch -# do_not_let_random_failure_tests_fail.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bedtools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
