This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-cutadapt.
commit 54002011f1f52aba4b0a89f8274fff587d7e549c Merge: e2c0774 500335b Author: Andreas Tille <[email protected]> Date: Sat Feb 10 13:14:32 2018 +0100 Update upstream source from tag 'upstream/1.15' Update to upstream version '1.15' with Debian dir 0f74a7e7d2ec83b009ae3e99c62f9459406b303a CHANGES.rst | 35 +- MANIFEST.in | 14 +- PKG-INFO | 2 +- cutadapt.egg-info/entry_points.txt | 3 - cutadapt.egg-info/requires.txt | 1 - cutadapt/scripts/__init__.py | 0 doc/conf.py | 6 +- doc/develop.rst | 124 + doc/guide.rst | 289 +- doc/ideas.rst | 16 +- doc/index.rst | 1 + doc/installation.rst | 69 +- doc/recipes.rst | 86 + setup.cfg | 4 +- setup.py | 45 +- .../cutadapt.egg-info}/PKG-INFO | 2 +- .../cutadapt.egg-info}/SOURCES.txt | 81 +- .../cutadapt.egg-info}/dependency_links.txt | 0 src/cutadapt.egg-info/entry_points.txt | 3 + src/cutadapt.egg-info/requires.txt | 1 + .../cutadapt.egg-info}/top_level.txt | 0 {cutadapt => src/cutadapt}/__init__.py | 0 .../cutadapt.py => src/cutadapt/__main__.py | 674 +-- {cutadapt => src/cutadapt}/_align.c | 1580 ++--- {cutadapt => src/cutadapt}/_align.pyx | 5 + {cutadapt => src/cutadapt}/_qualtrim.c | 266 +- {cutadapt => src/cutadapt}/_qualtrim.pyx | 0 {cutadapt => src/cutadapt}/_seqio.c | 6265 ++++++++++++++------ {cutadapt => src/cutadapt}/_seqio.pyx | 98 + {cutadapt => src/cutadapt}/_version.py | 4 +- {cutadapt => src/cutadapt}/adapters.py | 165 +- {cutadapt => src/cutadapt}/align.py | 0 {cutadapt => src/cutadapt}/colorspace.py | 0 {cutadapt => src/cutadapt}/compat.py | 0 {cutadapt => src/cutadapt}/filters.py | 183 +- {cutadapt => src/cutadapt}/modifiers.py | 61 +- src/cutadapt/pipeline.py | 651 ++ {cutadapt => src/cutadapt}/qualtrim.py | 0 {cutadapt => src/cutadapt}/report.py | 254 +- {cutadapt => src/cutadapt}/seqio.py | 226 +- tests/cut/demultiplexed.first.1.fastq | 4 + tests/cut/demultiplexed.first.2.fastq | 4 + tests/cut/demultiplexed.second.1.fastq | 4 + tests/cut/demultiplexed.second.2.fastq | 4 + tests/cut/demultiplexed.unknown.1.fastq | 8 + tests/cut/demultiplexed.unknown.2.fastq | 8 + ...d-not-anchored.fasta => linked-discard-g.fasta} | 6 - tests/cut/linked-discard.fasta | 6 + tests/cut/linked-not-anchored.fasta | 4 +- tests/data/block1.fastq.bz2 | Bin 87 -> 0 bytes tests/data/block2.fastq.bz2 | Bin 206 -> 0 bytes tests/{testadapters.py => test_adapters.py} | 76 +- tests/{testalign.py => test_align.py} | 0 tests/{testcolorspace.py => test_colorspace.py} | 4 +- tests/{tests.py => test_commandline.py} | 52 +- tests/{testfilters.py => test_filters.py} | 9 +- tests/{testmodifiers.py => test_modifiers.py} | 0 tests/{testpaired.py => test_paired.py} | 257 +- tests/{testqualtrim.py => test_qualtrim.py} | 1 + tests/{testseqio.py => test_seqio.py} | 81 +- tests/test_trim.py | 57 + tests/testtrim.py | 28 - tests/utils.py | 28 +- 63 files changed, 7696 insertions(+), 4159 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cutadapt.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
