Andreas Tille pushed to branch master at Debian Med / python-pysam
Commits: b26a5cb1 by Andreas Tille at 2018-02-17T21:37:46+01:00 Spelling - - - - - f5a61b70 by Andreas Tille at 2018-02-17T21:39:13+01:00 Drop removed files from d/copyright - - - - - b0e36229 by Andreas Tille at 2018-02-17T21:40:14+01:00 Update copyright - - - - - 1178ce77 by Andreas Tille at 2018-02-17T21:41:15+01:00 Silence lintian - - - - - 41efb549 by Andreas Tille at 2018-02-17T21:42:20+01:00 Drop unused lintian override - - - - - 75367b93 by Andreas Tille at 2018-02-17T21:45:00+01:00 Update lintian overrides - - - - - 52c8ec10 by Andreas Tille at 2018-02-17T21:56:57+01:00 Upload to unstable - - - - - 6 changed files: - debian/changelog - debian/copyright - debian/patches/execute-linking-tests-only-when-explicitely-reque.patch - debian/python-pysam-tests.lintian-overrides - − debian/source/lintian-overrides - debian/tests/control Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,4 +1,4 @@ -python-pysam (0.14+ds-1) UNRELEASED; urgency=medium +python-pysam (0.14+ds-1) unstable; urgency=medium * New upstream version * d/rules: Exclude tests using http access @@ -7,8 +7,10 @@ python-pysam (0.14+ds-1) UNRELEASED; urgency=medium * debhelper 11 * do not remove samtools/tmp_file.h in clean target * do not depend from non-existing data file in make test target + * Update d/copyright + * Update lintian overrides - -- Andreas Tille <[email protected]> Sat, 17 Feb 2018 15:24:34 +0100 + -- Andreas Tille <[email protected]> Sat, 17 Feb 2018 21:45:07 +0100 python-pysam (0.13.0+ds-1) unstable; urgency=medium ===================================== debian/copyright ===================================== --- a/debian/copyright +++ b/debian/copyright @@ -1,11 +1,11 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: pysam Upstream-Contact: Andreas Heger <[email protected]> Source: https://github.com/pysam-developers/pysam Files-Excluded: htslib/* Files: * -Copyright: 2009-2016 Andreas Heger, +Copyright: 2009-2018 Andreas Heger, Tildon Grant Belgrad, Martin Goodson, Kevin Jacobs <[email protected]> @@ -14,7 +14,7 @@ License: MIT Files: bcftools/* Copyright: - 2013-2015 Genome Research Ltd. + 2013-2018 Genome Research Ltd. 2010-2011 Broad Institute License: MIT @@ -39,10 +39,6 @@ Copyright: 2008-2014 Genome Research Ltd. 2012-2013 Peter Cock, The James Hutton Institute License: MIT -Files: samtools/kprobaln.c samtools/kprobaln.c.pysam.c samtools/kprobaln.h -Copyright: 2003-2006, 2008-2010, by Heng Li <[email protected]> -License: MIT - Files: samtools/misc/ace2sam.* Copyright: 2011 Heng Li License: MIT @@ -91,7 +87,7 @@ Copyright: 2015-2016 Afif Elghraoui <[email protected]> 2015 Jorge Soares <[email protected]> 2014-2015 Charles Plessy <[email protected]> - 2014-2015 Andreas Tille <[email protected]> + 2014-2018 Andreas Tille <[email protected]> License: MIT License: BSD-3-clause ===================================== debian/patches/execute-linking-tests-only-when-explicitely-reque.patch ===================================== --- a/debian/patches/execute-linking-tests-only-when-explicitely-reque.patch +++ b/debian/patches/execute-linking-tests-only-when-explicitely-reque.patch @@ -1,7 +1,7 @@ From: Andreas Heger <[email protected]> Date: Mon, 18 Sep 2017 11:19:28 +0100 Bug-Debian: https://bugs.debian.org/871083 -Subject: execute linking tests only when explicitely +Subject: execute linking tests only when explicitly requested via PYSAM_LINKING_TESTS env var. Keep on travis. Fixes #534 --- ===================================== debian/python-pysam-tests.lintian-overrides ===================================== --- a/debian/python-pysam-tests.lintian-overrides +++ b/debian/python-pysam-tests.lintian-overrides @@ -2,4 +2,4 @@ zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/cbcf_data/example_empty.vcf zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz # The duplicate is used for testing and needs to be there -duplicated-compressed-file usr/share/doc/python-pysam/tests/pysam_data/ex1.fa.gz +duplicated-compressed-file usr/share/doc/python-pysam/tests/tabix_data/example.bed.gz \ No newline at end of file ===================================== debian/source/lintian-overrides deleted ===================================== --- a/debian/source/lintian-overrides +++ /dev/null @@ -1,2 +0,0 @@ -# lintian seems to wild guess here from the package name but the test data are for python and python3 -python-pysam source: python-foo-but-no-python3-foo python-pysam-tests ===================================== debian/tests/control ===================================== --- a/debian/tests/control +++ b/debian/tests/control @@ -1,11 +1,7 @@ Test-Command: make -C tests/pysam_data && make -C tests/cbcf_data && pytest -Depends: - @builddeps@, - python-pysam, +Depends: @builddeps@, python-pysam Restrictions: allow-stderr, rw-build-tree Test-Command: make -C tests/pysam_data && make -C tests/cbcf_data && pytest-3 -Depends: - @builddeps@, - python3-pysam, +Depends: @builddeps@, python3-pysam, Restrictions: allow-stderr, rw-build-tree View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced --- View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced You're receiving this email because of your account on salsa.debian.org.
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