Andreas Tille pushed to branch master at Debian Med / bcftools
Commits: b0ea4fae by Andreas Tille at 2018-02-20T16:33:06+01:00 Follow hint of Graham Inggs to skip single test that is new in this version - - - - - 3 changed files: - debian/changelog - debian/patches/series - + debian/patches/skip_new_test_failing_on_32bit.patch Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,11 @@ +bcftools (1.7-2) unstable; urgency=medium + + * Team upload. + * Follow hint of Graham Inggs to skip single test that is new in this version + Closes: #890704 + + -- Andreas Tille <[email protected]> Tue, 20 Feb 2018 16:32:47 +0100 + bcftools (1.7-1) unstable; urgency=medium * Team upload ===================================== debian/patches/series ===================================== --- a/debian/patches/series +++ b/debian/patches/series @@ -1 +1,2 @@ tests-pluginpath.patch +skip_new_test_failing_on_32bit.patch ===================================== debian/patches/skip_new_test_failing_on_32bit.patch ===================================== --- /dev/null +++ b/debian/patches/skip_new_test_failing_on_32bit.patch @@ -0,0 +1,22 @@ +Author: Graham Inggs <[email protected]> +Last-Update: Sun, 18 Feb 2018 12:06:22 +0200 +Bug-Debian: https://bugs.debian.org/890704 +Bug-Upstream: https://github.com/samtools/bcftools/issues/744 +Description: Skip single test causing new failures + This is a new test that was added in 1.7, so it is not a regression. + . + One option is to simply skip it for now. + . + FIXME: This workaround needs to be reconsidered in future versions + +--- a/test/test.pl ++++ b/test/test.pl +@@ -132,7 +132,7 @@ test_vcf_query($opts,in=>'view.filter',o + test_vcf_query($opts,in=>'query.filter.3',out=>'query.51.out',args=>q[-f'[\\t%GT\\n]\\n' -i'GT~"1" && GT~"2"']); + test_vcf_query($opts,in=>'query.filter.3',out=>'query.52.out',args=>q[-f'[\\t%GT\\n]\\n' -i'GT~"1" & GT~"2"']); + test_vcf_query($opts,in=>'query.filter.3',out=>'query.53.out',args=>q[-f'%POS[\\t%GT]\\n' -i'COUNT(GT="het")=1']); +-test_vcf_query($opts,in=>'filter.5',out=>'query.54.out',args=>q[-f'[%POS %SAMPLE %AD\\n]\\n' -i'AD[:0]+AD[:1] > 12']); ++#test_vcf_query($opts,in=>'filter.5',out=>'query.54.out',args=>q[-f'[%POS %SAMPLE %AD\\n]\\n' -i'AD[:0]+AD[:1] > 12']); + test_vcf_query($opts,in=>'query.filter.4',out=>'query.55.out',args=>q[-f'%POS\\t%REF\\t%ALT[\\t%GT]\\n' -e'TYPE!="snp" || ALT="*"']); + test_vcf_norm($opts,in=>'norm',out=>'norm.out',fai=>'norm',args=>'-cx'); + test_vcf_norm($opts,in=>'norm.split',out=>'norm.split.out',args=>'-m-'); View it on GitLab: https://salsa.debian.org/med-team/bcftools/commit/b0ea4fae718cf8bdc8a3779042ea2222a631df2a --- View it on GitLab: https://salsa.debian.org/med-team/bcftools/commit/b0ea4fae718cf8bdc8a3779042ea2222a631df2a You're receiving this email because of your account on salsa.debian.org.
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