Andreas Tille pushed to branch master at Debian Med / blasr
Commits: 82aa68ff by Andreas Tille at 2018-03-11T17:59:16+01:00 Support for HDF5 1.10.1 - - - - - f60a78df by Andreas Tille at 2018-03-11T18:01:54+01:00 more cme-ish sequence of entries, Standards-Version: 4.1.3 - - - - - ff3689b0 by Andreas Tille at 2018-03-11T18:09:42+01:00 debhelper 11 - - - - - 7d133c72 by Andreas Tille at 2018-03-11T18:10:57+01:00 Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/compat - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,4 +1,6 @@ -blasr (5.3+0-2) UNRELEASED; urgency=low +blasr (5.3+0-2) unstable; urgency=low + + * Team upload [ Steffen Moeller ] * debian/upstream/metadata: Added references to OMICtools and RRID @@ -6,7 +8,17 @@ blasr (5.3+0-2) UNRELEASED; urgency=low [ Afif Elghraoui ] * Add README.source - -- Afif Elghraoui <[email protected]> Fri, 11 Aug 2017 16:33:50 -0400 + [ Gilles Filippini ] + * Support for HDF5 1.10.1 + Closes: #892630 + + [ Andreas Tille ] + * d/control: + - more cme-ish sequence of entries + - Standards-Version: 4.1.3 + * debhelper 11 + + -- Andreas Tille <[email protected]> Sun, 11 Mar 2018 18:02:22 +0100 blasr (5.3+0-1) unstable; urgency=medium ===================================== debian/compat ===================================== --- a/debian/compat +++ b/debian/compat @@ -1 +1 @@ -9 +11 ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -1,10 +1,10 @@ Source: blasr -Section: science -Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Afif Elghraoui <[email protected]> +Section: science +Priority: optional Build-Depends: - debhelper (>= 9), + debhelper (>= 11~), python, cmake, libboost-dev, @@ -12,10 +12,10 @@ Build-Depends: zlib1g-dev, libpbseq-dev (>= 0~20160912), libpbbam-dev, -Standards-Version: 3.9.8 -Homepage: https://github.com/PacificBiosciences/blasr -Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git +Standards-Version: 4.1.3 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/blasr.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git +Homepage: https://github.com/PacificBiosciences/blasr Package: blasr Architecture: any ===================================== debian/rules ===================================== --- a/debian/rules +++ b/debian/rules @@ -20,11 +20,17 @@ export LIBPBDATA_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) export LIBPBIHDF_INC=$(PBDATA_ROOT_DIR)/hdf export LIBPBIHDF_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) +# Needed for HDF5 1.10.1 support +HDF5_VERSION := $(shell grep 'HDF5 Version' $(HDF5_LIB)/libhdf5.settings | awk '{print $$3}') +ifeq (yes,$(shell dpkg --compare-versions $(HDF5_VERSION) '>=' 1.10.1 && echo yes)) +export DEB_CXXFLAGS_MAINT_APPEND=-DHAVE_HDF5_1_10_1 +endif + # CPPFLAGS apparently aren't exported for bam2bax/bax2bam export DEB_CXXFLAGS_MAINT_PREPEND = $(CPPFLAGS) -I$(PBDATA_ROOT_DIR) %: - dh $@ --parallel + dh $@ override_dh_auto_configure: ./configure.py --shared View it on GitLab: https://salsa.debian.org/med-team/blasr/compare/2d8806232619d07f03a87bf7114882225aa2eb16...7d133c72cce3493b730e44b28c462bd1ee97494b --- View it on GitLab: https://salsa.debian.org/med-team/blasr/compare/2d8806232619d07f03a87bf7114882225aa2eb16...7d133c72cce3493b730e44b28c462bd1ee97494b You're receiving this email because of your account on salsa.debian.org.
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