Andreas Tille pushed to branch debian/jessie-backports at Debian Med / seqan2
Commits: 9a4a7481 by Andreas Tille at 2016-12-02T23:45:08+01:00 New upstream version 2.2.0+dfsg - - - - - c804db8f by Michael R. Crusoe at 2017-01-14T03:43:56-08:00 New upstream version 2.3.0~0.20161011~73a5aaf+dfsg - - - - - 1d7cc220 by Michael R. Crusoe at 2017-01-14T03:43:56-08:00 New upstream version 2.3.0~0.20161019~af07bc1+dfsg - - - - - d315dede by Michael R. Crusoe at 2017-01-14T03:43:56-08:00 New upstream version 2.3.1+dfsg - - - - - c3694948 by Sascha Steinbiss at 2017-07-05T08:32:09+02:00 make build reproducible - - - - - b70ac79b by Michael R. Crusoe at 2017-09-28T07:44:06-07:00 New upstream version 2.3.2+dfsg - - - - - 5db3cf73 by Michael R. Crusoe at 2017-09-28T07:46:18-07:00 Updated version 2.3.2+dfsg from 'upstream/2.3.2+dfsg' with Debian dir 0811ffed9627e5c0994a1eff090e137026ff636c - - - - - 6d28a626 by Michael R. Crusoe at 2017-09-28T09:16:59-07:00 re-enable armel - - - - - 09c200d6 by Michael R. Crusoe at 2017-10-07T10:29:13-07:00 bye, armel; hello armhf - - - - - e13c298f by Michael R. Crusoe at 2017-10-13T03:16:52-07:00 bye armhf; enforce & fix the tests Fix tests to work with -DSEQAN_DISABLE_VERSION_CHECK=YES - - - - - 5f349621 by Michael R. Crusoe at 2017-10-13T04:38:14-07:00 New upstream version 2.3.2+dfsg2 - - - - - 2a46319d by Michael R. Crusoe at 2017-10-13T04:40:17-07:00 Updated version 2.3.2+dfsg2 from 'upstream/2.3.2+dfsg2' with Debian dir 9a75781a814c8c5ff88cfb9eb94aa8c96b8e0a41 - - - - - 0a11a583 by Michael R. Crusoe at 2017-10-13T05:01:59-07:00 release - - - - - 0b62576d by Michael R. Crusoe at 2017-10-14T05:54:24-07:00 remove jinja2; async-io (sometimes) - - - - - f945f143 by Michael R. Crusoe at 2017-10-23T09:27:28-07:00 New upstream version 2.3.2.000platform-issues0-8ae7bc0+dfsg1 - - - - - c7ad6053 by Michael R. Crusoe at 2017-10-23T09:35:31-07:00 Updated version 2.3.2.000platform-issues0-8ae7bc0+dfsg1 from 'upstream/2.3.2.000platform-issues0-8ae7bc0+dfsg1' with Debian dir 4715d4eee1613a998c97a4407278a7a4e75e9047 - - - - - 6c0a547a by Michael R. Crusoe at 2017-10-24T00:09:55-07:00 Test build of https://github.com/h-2/seqan/tree/fix/platform_issues - - - - - 50d0647d by Michael R. Crusoe at 2017-10-24T04:56:19-07:00 Backport debian/rules from experimental - - - - - 275e0e89 by Michael R. Crusoe at 2017-10-25T04:06:09-07:00 New upstream version 2.3.2.000platform-issues1-66a8baf+dfsg - - - - - 53ef67ba by Michael R. Crusoe at 2017-10-25T04:08:13-07:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues1-66a8baf+dfsg' Update to upstream version '2.3.2.000platform-issues1-66a8baf+dfsg' with Debian dir d0a5c0a4888237e7c609cd3d033d265f157adb28 - - - - - c8cb0dfc by Michael R. Crusoe at 2017-10-25T04:09:33-07:00 Additional fixes from upstream - - - - - 7a6c1f58 by Steffen Moeller at 2017-10-25T15:09:39+02:00 Added RRIDs - - - - - be622bdc by Michael R. Crusoe at 2017-10-26T01:16:11-07:00 typo, -01 should have been -O1 - - - - - 4a9ae400 by Michael R. Crusoe at 2017-10-26T01:22:19-07:00 disable razers on mips - - - - - f129a454 by Michael R. Crusoe at 2017-10-26T03:06:38-07:00 temp allow parallel always - - - - - 23692a21 by Michael R. Crusoe at 2017-10-26T05:13:29-07:00 New upstream version 2.3.2.000platform-issues2-206d1f7+dfsg - - - - - 54089dd7 by Michael R. Crusoe at 2017-10-26T05:15:48-07:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues2-206d1f7+dfsg' Update to upstream version '2.3.2.000platform-issues2-206d1f7+dfsg' with Debian dir 35d80880c115a9b15d792fd4d5c7d6f4932344fa - - - - - 3ba33480 by Michael R. Crusoe at 2017-10-26T08:48:22-07:00 additional push from upstream - - - - - eaae4ca1 by Michael R. Crusoe at 2017-10-26T23:41:02-07:00 re-enable parallel build override - - - - - 3cf71dc8 by Michael R. Crusoe at 2017-10-29T05:30:08-07:00 disable razer{,3} on mips; tweak arm{el,hf} - - - - - ec19b5d1 by Michael R. Crusoe at 2017-11-02T10:42:25-07:00 document partial app skipping for mips - - - - - b32d493f by Michael R. Crusoe at 2017-11-02T11:04:15-07:00 New upstream version 2.3.2.000platform-issues3-1d438c8+dfsg - - - - - 078a9fbe by Michael R. Crusoe at 2017-11-02T11:06:30-07:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues3-1d438c8+dfsg' Update to upstream version '2.3.2.000platform-issues3-1d438c8+dfsg' with Debian dir 740f0a1ff0d29a2148b8acb9c03646cbc19ba639 - - - - - 1d691d69 by Michael R. Crusoe at 2017-11-02T11:41:31-07:00 new code from upstream - - - - - a3a2a497 by Michael R. Crusoe at 2017-11-04T02:17:44-07:00 skip yara on armhf, sh4 - - - - - d555c954 by Michael R. Crusoe at 2017-11-05T08:22:13-08:00 Skip yara on armel - - - - - b94ee537 by Michael R. Crusoe at 2017-11-06T11:52:53-08:00 New upstream version 2.3.2.000platform-issues4-fba8744+dfsg - - - - - 5eef82a7 by Michael R. Crusoe at 2017-11-06T11:55:19-08:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues4-fba8744+dfsg' Update to upstream version '2.3.2.000platform-issues4-fba8744+dfsg' with Debian dir f1b1ca31195adaef05c9c1e03c52f96f2a3601ae - - - - - 896e60b6 by Michael R. Crusoe at 2017-11-06T11:58:05-08:00 freshen upstream - - - - - f0605098 by Michael R. Crusoe at 2017-11-06T12:15:51-08:00 Add test on sparc64 to aid debugging - - - - - 082378dd by Michael R. Crusoe at 2017-11-08T06:57:53-08:00 update sparc64 test, defines as per upstream - - - - - e3580d12 by Michael R. Crusoe at 2017-11-08T06:58:20-08:00 New upstream version 2.3.2.000platform-issues5-86390dc+dfsg - - - - - 069f08d1 by Michael R. Crusoe at 2017-11-08T07:00:33-08:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues5-86390dc+dfsg' Update to upstream version '2.3.2.000platform-issues5-86390dc+dfsg' with Debian dir bd2caac6d65426dcd6b77c6448d168fe15f165ee - - - - - 9e19748c by Michael R. Crusoe at 2017-11-08T07:03:31-08:00 Another update from upstream - - - - - 49e1ab6f by Michael R. Crusoe at 2017-11-09T03:32:01-08:00 cleanup env vars - - - - - 8b125f4d by Michael R. Crusoe at 2017-11-10T00:49:48-08:00 Skip yara on kfreebsd-i386 - - - - - 06d2ec67 by Michael R. Crusoe at 2017-11-10T01:00:06-08:00 Try out -O2 on archs that had been previously -O1 - - - - - b2ca48ca by Michael R. Crusoe at 2017-11-10T06:14:15-08:00 use seqan's built in manpage support - - - - - 723871cf by Michael R. Crusoe at 2017-11-11T05:39:58-08:00 fix typo - - - - - c1d8a216 by Michael R. Crusoe at 2017-11-11T05:40:26-08:00 New upstream version 2.3.2.000platform-issues6-9cf5a69+dfsg - - - - - 072ceb6f by Michael R. Crusoe at 2017-11-11T05:42:40-08:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues6-9cf5a69+dfsg' Update to upstream version '2.3.2.000platform-issues6-9cf5a69+dfsg' with Debian dir 1267d9b88b993779fdc305a66f60a8663b3a51d2 - - - - - 56831a02 by Michael R. Crusoe at 2017-11-11T05:44:40-08:00 >From upstream: another round of changes for the problems that affect all big >endian. - - - - - 1bff7cfe by Michael R. Crusoe at 2017-11-18T04:50:59-08:00 -O3 for all, delete broken symlinks to fix manpage generation - - - - - e3e3df8e by Michael R. Crusoe at 2017-11-18T06:19:50-08:00 type fix - - - - - 5b16e2c3 by Andreas Tille at 2017-11-20T09:14:37+01:00 This (not tested!) workaround does not answer the questions of the bug reporter but should cure the symptom - - - - - 4317cafc by Andreas Tille at 2017-11-20T09:15:25+01:00 d/rules: drop --parallel which is redundant for debhelper 10 - - - - - 133a61b1 by Andreas Tille at 2017-11-21T21:54:33-08:00 This (not tested!) workaround does not answer the questions of the bug reporter but should cure the symptom - - - - - 40a4649d by Michael R. Crusoe at 2017-11-21T22:15:13-08:00 New upstream version 2.3.2.000platform-issues7-41f58c3+dfsg - - - - - 73751432 by Michael R. Crusoe at 2017-11-21T22:17:25-08:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues7-41f58c3+dfsg' Update to upstream version '2.3.2.000platform-issues7-41f58c3+dfsg' with Debian dir 8de8dc689b74872a88bde1d0af0cedab370bc938 - - - - - 508f8848 by Michael R. Crusoe at 2017-11-21T22:19:37-08:00 one more time - - - - - b3f954be by Andreas Tille at 2017-12-06T11:06:08+01:00 Fix indep-only build - - - - - bd23584e by Andreas Tille at 2017-12-06T11:06:28+01:00 Upload to experimental - - - - - ca43e4b1 by Andreas Tille at 2017-12-06T11:11:48+01:00 Do not generate manpages in arch indep builds (as done in experimental branch) - - - - - 5f328217 by Andreas Tille at 2017-12-06T11:12:24+01:00 Upload to unstable - - - - - acb58c79 by Michael R. Crusoe at 2017-12-06T05:29:19-08:00 Merge remote-tracking branch 'origin/experimental' into experimental - - - - - e738023b by Michael R. Crusoe at 2017-12-06T05:34:42-08:00 catch up with fixes from unstable - - - - - 9f5dc027 by Michael R. Crusoe at 2017-12-08T02:42:37-08:00 New upstream version 2.3.2.000platform-issues8-6f85721+dfsg - - - - - 6831e002 by Michael R. Crusoe at 2017-12-08T02:44:45-08:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues8-6f85721+dfsg' Update to upstream version '2.3.2.000platform-issues8-6f85721+dfsg' with Debian dir 4270d2cde5632a99bd07a2422da3d817f2293d87 - - - - - cbb003f8 by Michael R. Crusoe at 2017-12-08T04:41:23-08:00 Another update from upstream - - - - - 864446e3 by Michael R. Crusoe at 2017-12-14T01:51:39-08:00 force rebuild - - - - - 04b9d2f0 by Michael R. Crusoe at 2017-12-20T06:53:44-08:00 keep async, try a regular release - - - - - 817a28f1 by Michael R. Crusoe at 2017-12-20T07:25:55-08:00 New upstream version 2.3.2.000platform-issues9-028fd79+dfsg - - - - - 8e1ffee0 by Michael R. Crusoe at 2017-12-20T07:28:11-08:00 Update upstream source from tag 'upstream/2.3.2.000platform-issues9-028fd79+dfsg' Update to upstream version '2.3.2.000platform-issues9-028fd79+dfsg' with Debian dir c25558f6b078c9a290a77ec92bb85bbb8df1f95b - - - - - efe35a2e by Michael R. Crusoe at 2017-12-20T07:40:33-08:00 another update from upstream - - - - - 30d3c43b by Michael R. Crusoe at 2017-12-20T23:59:50-08:00 switch to -DCMAKE_BUILD_TYPE=Release as per upstream - - - - - b19650ac by Michael R. Crusoe at 2017-12-22T00:03:55-08:00 cleanup build flags - - - - - 49551449 by Michael R. Crusoe at 2018-01-03T09:11:34-08:00 New upstream version 2.3.2.001platform-issues10-6f85721+dfsg - - - - - 9b11d081 by Michael R. Crusoe at 2018-01-03T09:13:44-08:00 Update upstream source from tag 'upstream/2.3.2.001platform-issues10-6f85721+dfsg' Update to upstream version '2.3.2.001platform-issues10-6f85721+dfsg' with Debian dir 44be9185e1cf97bc5cc6e5e69231ab333c79c707 - - - - - 37920383 by Michael R. Crusoe at 2018-01-03T09:27:37-08:00 hopefully final update from upstream before 2.4 - - - - - 06b4aa44 by Michael R. Crusoe at 2018-01-04T05:11:49-08:00 enable asyncio everywhere & disable parallel building on powerpcspe - - - - - 194b7d53 by Michael R. Crusoe at 2018-01-26T09:42:46-08:00 New upstream version 2.4.0~rc0+dfsg - - - - - dc253289 by Michael R. Crusoe at 2018-01-26T09:44:44-08:00 Update upstream source from tag 'upstream/2.4.0_rc0+dfsg' Update to upstream version '2.4.0~rc0+dfsg' with Debian dir 78da67cef37a7be02c018a184a43ff58be6f70b8 - - - - - 6b7365e5 by Michael R. Crusoe at 2018-01-26T10:14:29-08:00 Testing upstream's formal release candidate - - - - - 63848311 by Michael R. Crusoe at 2018-01-30T02:57:24-08:00 New upstream version 2.4.0~rc1+dfsg - - - - - 109f05e7 by Michael R. Crusoe at 2018-01-30T02:59:17-08:00 Update upstream source from tag 'upstream/2.4.0_rc1+dfsg' Update to upstream version '2.4.0~rc1+dfsg' with Debian dir 89248c2d76ae2463a8d7a1c7f08bcbd856cc1db2 - - - - - 90551756 by Michael R. Crusoe at 2018-01-30T03:00:57-08:00 Testing upstream's 2nd formal release candidate - - - - - d20dbd5a by Michael R. Crusoe at 2018-01-31T04:18:42-08:00 Drop amd64, mips, mipsel to -j3 to save memory - - - - - fcc93842 by Michael R. Crusoe at 2018-01-31T08:42:03-08:00 typo - - - - - d7aab135 by Michael R. Crusoe at 2018-01-31T08:46:39-08:00 New upstream version 2.4.0~rc2+dfsg - - - - - 27a0a769 by Michael R. Crusoe at 2018-01-31T08:48:35-08:00 Update upstream source from tag 'upstream/2.4.0_rc2+dfsg' Update to upstream version '2.4.0~rc2+dfsg' with Debian dir 5fcff5f6e0e328629a8218a5328cc562436fb17a - - - - - 7e3cc84a by Michael R. Crusoe at 2018-01-31T22:37:58-08:00 Testing upstream's 3rd formal release candidate for 2.4.0 - - - - - 26d12351 by Michael R. Crusoe at 2018-02-05T06:53:27-08:00 Merge branch 'experimental' - - - - - 1fe74e5e by Michael R. Crusoe at 2018-02-05T07:06:01-08:00 New upstream version 2.4.0+dfsg - - - - - 996ce03d by Michael R. Crusoe at 2018-02-05T07:08:05-08:00 Update upstream source from tag 'upstream/2.4.0+dfsg' Update to upstream version '2.4.0+dfsg' with Debian dir e9d0976e959e0576693ddaae86a348c42a1d8dc3 - - - - - 22b00e1b by Michael R. Crusoe at 2018-02-05T07:52:29-08:00 2.4.0 - - - - - 655bf275 by Michael R. Crusoe at 2018-02-05T11:53:14-08:00 fix pkgconfig - - - - - a6fa2092 by Michael R. Crusoe at 2018-02-06T06:19:25-08:00 Install seqan-2.pc to /usr/share/pkgconfig as it is arch independent - - - - - f197bc1e by Michael R. Crusoe at 2018-02-07T03:29:59-08:00 Drop mips{,el} down to 2 max parallel builds. - - - - - fa67ffc2 by Michael R. Crusoe at 2018-02-08T03:57:02-08:00 mips{,el} max parallel⇒1, AMD64⇒2 - - - - - 7e5f361c by Michael R. Crusoe at 2018-02-08T06:15:36-08:00 Update seqan-config.cmake installation location as per upstream - - - - - 490f784e by Michael R. Crusoe at 2018-02-09T03:54:01-08:00 Drop mips* to -O2 from -O3 - - - - - fdf585d4 by Michael R. Crusoe at 2018-02-10T10:38:00-08:00 Ship CWL descriptions for a subset of seqan-apps - - - - - 8940c0d5 by Michael R. Crusoe at 2018-02-10T10:50:13-08:00 skip mipsel due to lack of memory - - - - - 3ba52a4d by Michael R. Crusoe at 2018-02-11T02:56:53-08:00 skip mips due to lack of memory - - - - - 7a2518ab by Michael R. Crusoe at 2018-02-11T02:57:12-08:00 make executable example scripts - - - - - 0b161e58 by Michael R. Crusoe at 2018-02-16T04:27:47-08:00 Retry mips*; patch adapted from Adrian Bunk <[email protected]> - - - - - 3441043b by Michael R. Crusoe at 2018-02-16T04:32:57-08:00 Document CWL generation. Mark all CWL files as executable - - - - - 777353ec by Michael R. Crusoe at 2018-02-16T05:08:12-08:00 add AutoPackageTests for seqan-apps - - - - - a4b568f0 by Michael R. Crusoe at 2018-02-16T05:12:20-08:00 patch from upstream: add mandatory ctdVersion element. - - - - - a6dab878 by Michael R. Crusoe at 2018-02-16T05:19:10-08:00 Suggest cwltool | cwl-runner - - - - - faf937c1 by Michael R. Crusoe at 2018-02-16T05:35:43-08:00 Fix errors in manpage output - - - - - 553e776b by Michael R. Crusoe at 2018-02-17T07:10:14-08:00 release 2.4.0+dfsg-6 - - - - - 7c5c8fa0 by Michael R. Crusoe at 2018-02-17T09:23:07-08:00 split arch/indep install - - - - - 8dee2cd3 by Michael R. Crusoe at 2018-02-19T02:15:23-08:00 Fix AutoPkgTests. Miscellaneous cleanups of debian/rules. - - - - - 0ef1b213 by Andreas Tille at 2018-03-26T11:37:54+02:00 Merge tag 'debian/2.4.0+dfsg-8' into debian/jessie-backports - - - - - 11237144 by Andreas Tille at 2018-03-26T11:38:48+02:00 Rebuild for jessie-backports - - - - - 30 changed files: - CHANGELOG.rst - CMakeLists.txt - LICENSE - README.rst - apps/alf/CMakeLists.txt - apps/alf/LICENSE - apps/alf/README - apps/alf/alf.cpp - apps/bs_tools/CMakeLists.txt - apps/bs_tools/LICENSE - apps/bs_tools/bisar.cpp - apps/bs_tools/bisar.h - apps/bs_tools/casbar.cpp - apps/bs_tools/casbar.h - apps/bs_tools/casbar_consensus_realign.h - apps/bs_tools/casbar_score.h - apps/bs_tools/four2three.cpp - apps/dfi/CMakeLists.txt - apps/dfi/README - apps/fiona/CMakeLists.txt - apps/fiona/compute_gain.cpp - apps/fiona/fiona.cpp - apps/fiona/index_qgram_parallel.h - apps/fx_tools/CMakeLists.txt - apps/fx_tools/LICENSE - apps/fx_tools/fx_bam_coverage.cpp - apps/fx_tools/fx_fastq_stats.cpp - apps/gustaf/CMakeLists.txt - apps/gustaf/LICENSE - apps/gustaf/README The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/seqan2/compare/5edb530e7022c54cd5884499938daf70627c7bef...11237144a3e069bffa3f7dd65a817f9685639a7c --- View it on GitLab: https://salsa.debian.org/med-team/seqan2/compare/5edb530e7022c54cd5884499938daf70627c7bef...11237144a3e069bffa3f7dd65a817f9685639a7c You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
