Michael R. Crusoe pushed to branch upstream at Debian Med / trinityrnaseq
Commits: a7e74199 by Michael R. Crusoe at 2018-03-28T08:15:43-07:00 New upstream version 2.6.6+dfsg - - - - - 30 changed files: - Analysis/DifferentialExpression/PtR - Analysis/DifferentialExpression/cut_tree_into_clusters.pl - Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl - Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl - Analysis/DifferentialExpression/matrix_to_gene_plots.pl - Analysis/DifferentialExpression/plot_expression_patterns.pl - Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl - Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl - Analysis/DifferentialExpression/run_DE_analysis.pl - Analysis/DifferentialExpression/run_GOseq.pl - Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl - Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.tiers_to_boxplot.pl - Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py - Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl - Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py - Analysis/SuperTranscripts/pylib/Compact_graph_whole.py - Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py - Analysis/SuperTranscripts/pylib/Node_path.py - Analysis/SuperTranscripts/pylib/Splice_model_refiner.py - Analysis/SuperTranscripts/pylib/TGraph.py - Changelog.txt - − Docker/Changelog.txt - Docker/Dockerfile - Docker/VERSION.txt - Trinity - trinity_ext_sample_data/test_VariantCalling/Makefile - − trinity_ext_sample_data/test_VariantCalling/runMe.sh - + util/misc/Trinity_genome_aligned_gff3_to_regrouped_genes_gtf.pl - util/misc/contig_ExN50_statistic.pl - + util/misc/filter_out_accs_from_fasta.pl The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/commit/a7e74199f56cb07688560b2a148b7bedf8709d36 --- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/commit/a7e74199f56cb07688560b2a148b7bedf8709d36 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
