Andreas Tille pushed to branch master at Debian Med / bedtools
Commits: 81cde7f3 by Andreas Tille at 2018-04-05T09:01:57+02:00 Install autopkgtest script as /usr/share/doc/bedtools/run-unit-test - - - - - 61b3b225 by Andreas Tille at 2018-04-05T09:03:00+02:00 Point Vcs fields to salsa.debian.org - - - - - d7fafd42 by Andreas Tille at 2018-04-05T09:26:34+02:00 Revert comment removal which was done for debugging - - - - - 6 changed files: - + debian/README.test - debian/bedtools.docs - debian/changelog - debian/control - debian/tests/control - debian/tests/upstream → debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== --- /dev/null +++ b/debian/README.test @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. ===================================== debian/bedtools.docs ===================================== --- a/debian/bedtools.docs +++ b/debian/bedtools.docs @@ -1 +1,3 @@ README.md +debian/README.test +debian/tests/run-unit-test ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +bedtools (2.27.1+dfsg-2) UNRELEASED; urgency=medium + + * Install autopkgtest script as /usr/share/doc/bedtools/run-unit-test + * Point Vcs fields to salsa.debian.org + + -- Andreas Tille <[email protected]> Thu, 05 Apr 2018 09:00:44 +0200 + bedtools (2.27.1+dfsg-1) unstable; urgency=medium * New upstream version ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -9,8 +9,8 @@ Build-Depends: debhelper (>= 11~), zlib1g-dev, samtools Standards-Version: 4.1.3 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/bedtools.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/bedtools.git +Vcs-Browser: https://salsa.debian.org/med-team/bedtools +Vcs-Git: https://salsa.debian.org/med-team/bedtools.git Homepage: https://github.com/arq5x/bedtools2 Package: bedtools ===================================== debian/tests/control ===================================== --- a/debian/tests/control +++ b/debian/tests/control @@ -1,3 +1,3 @@ -Tests: upstream +Tests: run-unit-test Depends: @, samtools, tabix Restrictions: allow-stderr ===================================== debian/tests/upstream → debian/tests/run-unit-test ===================================== --- a/debian/tests/upstream +++ b/debian/tests/run-unit-test @@ -5,15 +5,21 @@ if [ "$ADTTMP" = "" ] ; then trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM fi +set -x # Copy test suite there cp -a /usr/share/bedtools/test $ADTTMP # Link to genomes files cd $ADTTMP + ln -s /usr/share/bedtools/genomes # Enter the directory and run the tests cd $ADTTMP/test +# Test script is seeking for lower case dir +if [ -d groupBy ] ; then + ln -s groupBy groupby +fi DATA=/usr/share/bedtools/data BT=/usr/bin/bedtools sh test.sh | tee test.sh.output # Did it fail ? View it on GitLab: https://salsa.debian.org/med-team/bedtools/compare/93b2f6e50f6e650d9f84a2285dc9580034a54c6c...d7fafd4273bafdda76e6113353a76b426ad4cb34 --- View it on GitLab: https://salsa.debian.org/med-team/bedtools/compare/93b2f6e50f6e650d9f84a2285dc9580034a54c6c...d7fafd4273bafdda76e6113353a76b426ad4cb34 You're receiving this email because of your account on salsa.debian.org.
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