Andreas Tille pushed to branch master at Debian Med / picard-tools
Commits: 60f0c861 by Andreas Tille at 2018-04-17T16:41:27+02:00 New upstream version 2.18.2+dfsg - - - - - 2a828863 by Andreas Tille at 2018-04-17T16:42:11+02:00 Update upstream source from tag 'upstream/2.18.2+dfsg' Update to upstream version '2.18.2+dfsg' with Debian dir 1a713756b716baa60c31f1298a336ae7d2f08459 - - - - - 63de9cdf by Andreas Tille at 2018-04-17T22:46:59+02:00 New upstream version, adapt patches - - - - - 14d48ba8 by Andreas Tille at 2018-04-17T22:48:29+02:00 DEP3 - - - - - 336acb9f by Andreas Tille at 2018-04-17T22:52:35+02:00 Backports-friendly debhelper 11 - - - - - 0ae95078 by Andreas Tille at 2018-04-17T22:55:53+02:00 Bump versioned Build-Depends on libhtsjdk-java and default-jdk - - - - - 30 changed files: - .dockerignore - + .pullapprove.yml - .travis.yml - Dockerfile - + LICENSE.txt - README.md - build.gradle - debian/changelog - debian/control - debian/patches/10-build.xml.patch - debian/patches/20-shadowjar.patch - debian/patches/30-tests-fix-dataprovider.patch - debian/patches/40-tests-fix-testng.patch - gradle/wrapper/gradle-wrapper.properties - settings.gradle - src/main/java/picard/Test.java - + src/main/java/picard/analysis/AbstractWgsMetricsCollector.java - src/main/java/picard/analysis/AlignmentSummaryMetrics.java - src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java - src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java - src/main/java/picard/analysis/CollectBaseDistributionByCycle.java - src/main/java/picard/analysis/CollectGcBiasMetrics.java - src/main/java/picard/analysis/CollectInsertSizeMetrics.java - src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java - src/main/java/picard/analysis/CollectMultipleMetrics.java - src/main/java/picard/analysis/CollectOxoGMetrics.java - src/main/java/picard/analysis/CollectQualityYieldMetrics.java - src/main/java/picard/analysis/CollectRawWgsMetrics.java - src/main/java/picard/analysis/CollectRnaSeqMetrics.java - src/main/java/picard/analysis/CollectRrbsMetrics.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/e77131a1bc920e0851e0ac3fd85530b047278399...0ae95078608290068f564e4f32890ec2ab94fa98 --- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/e77131a1bc920e0851e0ac3fd85530b047278399...0ae95078608290068f564e4f32890ec2ab94fa98 You're receiving this email because of your account on salsa.debian.org.
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