Andreas Tille pushed to branch master at Debian Med / rockhopper
Commits: 481b89ef by Andreas Tille at 2018-05-20T07:11:47+02:00 Replace evil json - - - - - 853fce60 by Andreas Tille at 2018-05-20T07:15:13+02:00 New upstream version 2.0.3+dfsg - - - - - 6920b93f by Andreas Tille at 2018-05-20T07:15:34+02:00 Update upstream source from tag 'upstream/2.0.3+dfsg' Update to upstream version '2.0.3+dfsg' with Debian dir 7fdb9ac2aaa8bbeceb5904135d78915baa10a43e - - - - - 14a9f18a by Andreas Tille at 2018-05-20T07:16:10+02:00 debhelper 11 - - - - - 456830f4 by Andreas Tille at 2018-05-20T07:16:21+02:00 Point Vcs fields to salsa.debian.org - - - - - 0d560353 by Andreas Tille at 2018-05-20T07:16:21+02:00 Standards-Version: 4.1.4 - - - - - b91e68ef by Andreas Tille at 2018-05-20T07:18:46+02:00 Update packaging - - - - - 25 changed files: - debian/changelog - debian/compat - debian/control - debian/copyright - debian/rules - − org/json/CDL.class - − org/json/Cookie.class - − org/json/CookieList.class - − org/json/HTTP.class - − org/json/HTTPTokener.class - − org/json/JSONArray.class - − org/json/JSONException.class - − org/json/JSONML.class - − org/json/JSONObject$1.class - − org/json/JSONObject$Null.class - − org/json/JSONObject.class - − org/json/JSONString.class - − org/json/JSONStringer.class - − org/json/JSONTokener.class - − org/json/JSONWriter.class - − org/json/README - − org/json/Test$Beany.class - − org/json/Test.class - − org/json/XML.class - − org/json/XMLTokener.class Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -2,4 +2,4 @@ rockhopper (2.0.3+dfsg-1) UNRELEASED; urgency=medium * Initial release (Closes: #<bug>) - -- Andreas Tille <[email protected]> Mon, 21 Aug 2017 13:12:44 +0200 + -- Andreas Tille <[email protected]> Sun, 20 May 2018 07:16:21 +0200 ===================================== debian/compat ===================================== --- a/debian/compat +++ b/debian/compat @@ -1 +1 @@ -10 +11 ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -3,17 +3,20 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 10) -Standards-Version: 4.1.3 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/rockhopper.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/rockhopper.git +Build-Depends: debhelper (>= 11~), + javahelper, + default-jdk +Standards-Version: 4.1.4 +Vcs-Browser: https://salsa.debian.org/med-team/rockhopper +Vcs-Git: https://salsa.debian.org/med-team/rockhopper.git Homepage: http://cs.wellesley.edu/~btjaden/Rockhopper/ Package: rockhopper Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, - libhtsjdk-java + libhtsjdk-java, + libjson-simple-java Description: system for analyzing bacterial RNA-seq data Rockhopper is a comprehensive and user-friendly system for computational analysis of bacterial RNA-seq data. As input, Rockhopper ===================================== debian/copyright ===================================== --- a/debian/copyright +++ b/debian/copyright @@ -3,6 +3,7 @@ Upstream-Name: Rockhopper Source: http://cs.wellesley.edu/~btjaden/Rockhopper/download.html Files-Excluded: net/ org/broad/tribble + org/json Files: * Copyright: 2013 Brian Tjaden ===================================== debian/rules ===================================== --- a/debian/rules +++ b/debian/rules @@ -6,4 +6,4 @@ export LC_ALL=C.UTF-8 include /usr/share/dpkg/default.mk %: - dh $@ + dh $@ --with javahelper ===================================== org/json/CDL.class deleted ===================================== Binary files a/org/json/CDL.class and /dev/null differ ===================================== org/json/Cookie.class deleted ===================================== Binary files a/org/json/Cookie.class and /dev/null differ ===================================== org/json/CookieList.class deleted ===================================== Binary files a/org/json/CookieList.class and /dev/null differ ===================================== org/json/HTTP.class deleted ===================================== Binary files a/org/json/HTTP.class and /dev/null differ ===================================== org/json/HTTPTokener.class deleted ===================================== Binary files a/org/json/HTTPTokener.class and /dev/null differ ===================================== org/json/JSONArray.class deleted ===================================== Binary files a/org/json/JSONArray.class and /dev/null differ ===================================== org/json/JSONException.class deleted ===================================== Binary files a/org/json/JSONException.class and /dev/null differ ===================================== org/json/JSONML.class deleted ===================================== Binary files a/org/json/JSONML.class and /dev/null differ ===================================== org/json/JSONObject$1.class deleted ===================================== Binary files a/org/json/JSONObject$1.class and /dev/null differ ===================================== org/json/JSONObject$Null.class deleted ===================================== Binary files a/org/json/JSONObject$Null.class and /dev/null differ ===================================== org/json/JSONObject.class deleted ===================================== Binary files a/org/json/JSONObject.class and /dev/null differ ===================================== org/json/JSONString.class deleted ===================================== Binary files a/org/json/JSONString.class and /dev/null differ ===================================== org/json/JSONStringer.class deleted ===================================== Binary files a/org/json/JSONStringer.class and /dev/null differ ===================================== org/json/JSONTokener.class deleted ===================================== Binary files a/org/json/JSONTokener.class and /dev/null differ ===================================== org/json/JSONWriter.class deleted ===================================== Binary files a/org/json/JSONWriter.class and /dev/null differ ===================================== org/json/README deleted ===================================== --- a/org/json/README +++ /dev/null @@ -1,68 +0,0 @@ -JSON in Java [package org.json] - -Douglas Crockford [email protected] - -2011-02-02 - - -JSON is a light-weight, language independent, data interchange format. -See http://www.JSON.org/ - -The files in this package implement JSON encoders/decoders in Java. -It also includes the capability to convert between JSON and XML, HTTP -headers, Cookies, and CDL. - -This is a reference implementation. There is a large number of JSON packages -in Java. Perhaps someday the Java community will standardize on one. Until -then, choose carefully. - -The license includes this restriction: "The software shall be used for good, -not evil." If your conscience cannot live with that, then choose a different -package. - -The package compiles on Java 1.2 thru Java 1.4. - - -JSONObject.java: The JSONObject can parse text from a String or a JSONTokener -to produce a map-like object. The object provides methods for manipulating its -contents, and for producing a JSON compliant object serialization. - -JSONArray.java: The JSONObject can parse text from a String or a JSONTokener -to produce a vector-like object. The object provides methods for manipulating -its contents, and for producing a JSON compliant array serialization. - -JSONTokener.java: The JSONTokener breaks a text into a sequence of individual -tokens. It can be constructed from a String, Reader, or InputStream. - -JSONException.java: The JSONException is the standard exception type thrown -by this package. - - -JSONString.java: The JSONString interface requires a toJSONString method, -allowing an object to provide its own serialization. - -JSONStringer.java: The JSONStringer provides a convenient facility for -building JSON strings. - -JSONWriter.java: The JSONWriter provides a convenient facility for building -JSON text through a writer. - - -CDL.java: CDL provides support for converting between JSON and comma -delimited lists. - -Cookie.java: Cookie provides support for converting between JSON and cookies. - -CookieList.java: CookieList provides support for converting between JSON and -cookie lists. - -HTTP.java: HTTP provides support for converting between JSON and HTTP headers. - -HTTPTokener.java: HTTPTokener extends JSONTokener for parsing HTTP headers. - -XML.java: XML provides support for converting between JSON and XML. - -JSONML.java: JSONML provides support for converting between JSONML and XML. - -XMLTokener.java: XMLTokener extends JSONTokener for parsing XML text. \ No newline at end of file ===================================== org/json/Test$Beany.class deleted ===================================== Binary files a/org/json/Test$Beany.class and /dev/null differ ===================================== org/json/Test.class deleted ===================================== Binary files a/org/json/Test.class and /dev/null differ ===================================== org/json/XML.class deleted ===================================== Binary files a/org/json/XML.class and /dev/null differ ===================================== org/json/XMLTokener.class deleted ===================================== Binary files a/org/json/XMLTokener.class and /dev/null differ View it on GitLab: https://salsa.debian.org/med-team/rockhopper/compare/f754c48e65e099698d79f569f9311cbd10d16431...b91e68ef83bad1526abf3cd792f7f97665663821 --- View it on GitLab: https://salsa.debian.org/med-team/rockhopper/compare/f754c48e65e099698d79f569f9311cbd10d16431...b91e68ef83bad1526abf3cd792f7f97665663821 You're receiving this email because of your account on salsa.debian.org.
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