Andreas Tille pushed to branch master at Debian Med / kmerresistance
Commits: 958d2967 by Andreas Tille at 2018-06-12T08:51:42+02:00 Initial packaging - - - - - 10 changed files: - + debian/changelog - + debian/clean - + debian/compat - + debian/control - + debian/copyright - + debian/install - + debian/rules - + debian/source/format - + debian/upstream/metadata - + debian/watch Changes: ===================================== debian/changelog ===================================== --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +kmerresistance (2.0+git20180205.26467e9-1) UNRELEASED; urgency=medium + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Thu, 07 Jun 2018 21:55:00 +0200 ===================================== debian/clean ===================================== --- /dev/null +++ b/debian/clean @@ -0,0 +1 @@ +kmerresistance ===================================== debian/compat ===================================== --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +11 ===================================== debian/control ===================================== --- /dev/null +++ b/debian/control @@ -0,0 +1,21 @@ +Source: kmerresistance +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 11~) +Standards-Version: 4.1.4 +Vcs-Browser: https://salsa.debian.org/med-team/kmerresistance +Vcs-Git: https://salsa.debian.org/med-team/kmerresistance.git +Homepage: https://bitbucket.org/genomicepidemiology/kmerresistance + +Package: kmerresistance +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: correlates mapped genes with the predicted species of WGS samples, + KmerResistance correlates mapped genes with the predicted species of WGS + samples, where this this allows for identification of genes in samples + which have been poorly sequenced or high accuracy predictions for + samples with contamination. KmerResistance has one dependency, namely + KMA to perform the mapping, which is also freely available. ===================================== debian/copyright ===================================== --- /dev/null +++ b/debian/copyright @@ -0,0 +1,25 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: KmerResistance +Upstream-Contact: [email protected] +Source: https://bitbucket.org/genomicepidemiology/kmerresistance.git + +Files: * +Copyright: 2015-2017, Philip Clausen, Technical University of Denmark +License: Apache-2.0 + +Files: debian/* +Copyright: 2018 Andreas Tille <[email protected]> +License: Apache-2.0 + +License: Apache-2.0 + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + . + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. + . + On Debian systems you can find the full text of the Apache-2.0 + license at /usr/share/common-licenses/Apache-2.0. ===================================== debian/install ===================================== --- /dev/null +++ b/debian/install @@ -0,0 +1 @@ +kmerresistance usr/bin ===================================== debian/rules ===================================== --- /dev/null +++ b/debian/rules @@ -0,0 +1,11 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +export DEB_BUILD_MAINT_OPTIONS=hardening=+all + +%: + dh $@ + +override_dh_auto_build: + gcc $(CFLAGS) -o kmerresistance KmerResistance.c -lm $(LDFLAGS) ===================================== debian/source/format ===================================== --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) ===================================== debian/upstream/metadata ===================================== --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,12 @@ +Reference: + Author: Philip T. L. C. Clausen and Ea Zankari and Frank M. Aarestrup and Ole Lund + Title: Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data + Journal: Journal of Antimicrobial Chemotherapy + Year: 2016 + Volume: 71 + Number: 9 + Pages: 2484-8 + DOI: 10.1093/jac/dkw184 + PMID: 27365186 + URL: https://academic.oup.com/jac/article/71/9/2484/2238319 + eprint: https://academic.oup.com/jac/article-pdf/71/9/2484/17430278/dkw184.pdf ===================================== debian/watch ===================================== --- /dev/null +++ b/debian/watch @@ -0,0 +1,4 @@ +version=4 + +opts="mode=git,pretty=2.0+git%cd.%h" \ + https://bitbucket.org/genomicepidemiology/kmerresistance.git HEAD View it on GitLab: https://salsa.debian.org/med-team/kmerresistance/commit/958d2967121a9d9fc288acc0f917420af7a0964d -- View it on GitLab: https://salsa.debian.org/med-team/kmerresistance/commit/958d2967121a9d9fc288acc0f917420af7a0964d You're receiving this email because of your account on salsa.debian.org.
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