Andreas Tille pushed to branch master at Debian Med / fastlink
Commits: acbf75fa by Andreas Tille at 2018-07-05T11:07:46+02:00 Secure URI in Homepage - - - - - ac0bef03 by Andreas Tille at 2018-07-05T11:13:03+02:00 debian/get-orig-source: use https instead of ftp - - - - - f954ec5e by Andreas Tille at 2018-07-05T11:23:38+02:00 Be more cross-building friendly - - - - - 6e1a7333 by Andreas Tille at 2018-07-05T11:27:15+02:00 hardening=+all - - - - - 2fd30d25 by Andreas Tille at 2018-07-05T11:27:43+02:00 Enable debug symbols - - - - - 6e9befec by Andreas Tille at 2018-07-05T11:28:19+02:00 debhelper 11 - - - - - 6693548f by Andreas Tille at 2018-07-05T11:28:27+02:00 Point Vcs fields to salsa.debian.org - - - - - 5d19ba82 by Andreas Tille at 2018-07-05T11:28:27+02:00 Standards-Version: 4.1.4 - - - - - aa5879be by Andreas Tille at 2018-07-05T11:31:31+02:00 Adapt doc-base files to new location of docs (caused by debhelper 11) - - - - - 8efd91c5 by Andreas Tille at 2018-07-05T11:32:59+02:00 Revert adding -g since it does not help to create debug symbols - - - - - aa13d344 by Andreas Tille at 2018-07-05T11:36:02+02:00 Upload to unstable - - - - - 15 changed files: - debian/changelog - debian/compat - debian/control - debian/fastlink-doc.doc-base.alleles - debian/fastlink-doc.doc-base.autoselect - debian/fastlink-doc.doc-base.avoid-recomp - debian/fastlink-doc.doc-base.fastlink - debian/fastlink-doc.doc-base.loops - debian/fastlink-doc.doc-base.parallelization - debian/fastlink-doc.doc-base.parallelization2 - debian/fastlink-doc.doc-base.random - debian/fastlink-doc.doc-base.traverse - debian/fastlink-doc.doc-base.unknown - debian/get-orig-source - debian/rules Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,15 @@ +fastlink (4.1P-fix100+dfsg-2) unstable; urgency=medium + + * Secure URI in Homepage + * debian/get-orig-source: use https instead of ftp + * d/rules: Be more cross-building friendly + * hardening=+all + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.1.4 + + -- Andreas Tille <[email protected]> Thu, 05 Jul 2018 11:35:01 +0200 + fastlink (4.1P-fix100+dfsg-1) unstable; urgency=low * New upstream patch level ===================================== debian/compat ===================================== --- a/debian/compat +++ b/debian/compat @@ -1 +1 @@ -9 +11 ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -4,11 +4,11 @@ Uploaders: Andreas Tille <[email protected]>, Charles Plessy <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 9) -Standards-Version: 3.9.6 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/fastlink.git -Vcs-Git: git://anonscm.debian.org/debian-med/fastlink.git -Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html +Build-Depends: debhelper (>= 11~) +Standards-Version: 4.1.4 +Vcs-Browser: https://salsa.debian.org/med-team/fastlink +Vcs-Git: https://salsa.debian.org/med-team/fastlink.git +Homepage: https://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html Package: fastlink Architecture: any ===================================== debian/fastlink-doc.doc-base.alleles ===================================== --- a/debian/fastlink-doc.doc-base.alleles +++ b/debian/fastlink-doc.doc-base.alleles @@ -7,4 +7,4 @@ Abstract: This document describes the implementation in FASTLINK of some Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/paper5.ps.gz +Files: /usr/share/doc/fastlink/paper5.ps.gz ===================================== debian/fastlink-doc.doc-base.autoselect ===================================== --- a/debian/fastlink-doc.doc-base.autoselect +++ b/debian/fastlink-doc.doc-base.autoselect @@ -7,4 +7,4 @@ Abstract: This document describes how the LINKAGE program was enhanced Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/paper6.ps.gz +Files: /usr/share/doc/fastlink/paper6.ps.gz ===================================== debian/fastlink-doc.doc-base.avoid-recomp ===================================== --- a/debian/fastlink-doc.doc-base.avoid-recomp +++ b/debian/fastlink-doc.doc-base.avoid-recomp @@ -6,4 +6,4 @@ Abstract: This document describes improvements over the original LINKAGE Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/paper2.ps.gz +Files: /usr/share/doc/fastlink/paper2.ps.gz ===================================== debian/fastlink-doc.doc-base.fastlink ===================================== --- a/debian/fastlink-doc.doc-base.fastlink +++ b/debian/fastlink-doc.doc-base.fastlink @@ -7,4 +7,4 @@ Abstract: This document describes the basics of the fastlink allgorithm Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/paper1.ps.gz +Files: /usr/share/doc/fastlink/paper1.ps.gz ===================================== debian/fastlink-doc.doc-base.loops ===================================== --- a/debian/fastlink-doc.doc-base.loops +++ b/debian/fastlink-doc.doc-base.loops @@ -5,4 +5,4 @@ Abstract: This document describes some aspects of pedigree loops in fastlink. Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/loops.ps.gz +Files: /usr/share/doc/fastlink/loops.ps.gz ===================================== debian/fastlink-doc.doc-base.parallelization ===================================== --- a/debian/fastlink-doc.doc-base.parallelization +++ b/debian/fastlink-doc.doc-base.parallelization @@ -6,4 +6,4 @@ Abstract: This document describes a parallel implementation of a Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/paper3.ps.gz +Files: /usr/share/doc/fastlink/paper3.ps.gz ===================================== debian/fastlink-doc.doc-base.parallelization2 ===================================== --- a/debian/fastlink-doc.doc-base.parallelization2 +++ b/debian/fastlink-doc.doc-base.parallelization2 @@ -7,4 +7,4 @@ Abstract: This document describes a second parallel implementation of the Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/paper4.ps.gz +Files: /usr/share/doc/fastlink/paper4.ps.gz ===================================== debian/fastlink-doc.doc-base.random ===================================== --- a/debian/fastlink-doc.doc-base.random +++ b/debian/fastlink-doc.doc-base.random @@ -6,4 +6,4 @@ Abstract: This document describes how to find a minimum loop cutset in a Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/paper7.ps.gz +Files: /usr/share/doc/fastlink/paper7.ps.gz ===================================== debian/fastlink-doc.doc-base.traverse ===================================== --- a/debian/fastlink-doc.doc-base.traverse +++ b/debian/fastlink-doc.doc-base.traverse @@ -6,4 +6,4 @@ Abstract: This document describes some aspects of pedigree traversal in Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/traverse.ps.gz +Files: /usr/share/doc/fastlink/traverse.ps.gz ===================================== debian/fastlink-doc.doc-base.unknown ===================================== --- a/debian/fastlink-doc.doc-base.unknown +++ b/debian/fastlink-doc.doc-base.unknown @@ -6,4 +6,4 @@ Abstract: This document describes some aspects of the UNKNOWN auxiliary Section: Science/Biology Format: postscript -Files: /usr/share/doc/fastlink-doc/unknown.ps.gz +Files: /usr/share/doc/fastlink/unknown.ps.gz ===================================== debian/get-orig-source ===================================== --- a/debian/get-orig-source +++ b/debian/get-orig-source @@ -12,7 +12,7 @@ mkdir -p ../tarballs cd ../tarballs rm -f "$UPSTREAMTAR" -wget ftp://ftp.ncbi.nih.gov/pub/fastlink/$UPSTREAMTAR +wget https://ftp.ncbi.nih.gov/pub/fastlink/$UPSTREAMTAR tar -xzf "$UPSTREAMTAR" PATCHVERSION=`grep -v "^ " fastlink/README.updates | tail -n 1 | sed 's/^\([0-9a-z]\+\)\..*/\1/'` ===================================== debian/rules ===================================== --- a/debian/rules +++ b/debian/rules @@ -1,13 +1,18 @@ #!/usr/bin/make -f +export DEB_BUILD_MAINT_OPTIONS=hardening=+all + %: - dh $@ + dh $@ --sourcedirectory=4.1P/src override_dh_clean: - cd 4.1P/src; make allclean + dh_clean -- allclean override_dh_auto_build: - cd 4.1P/src && make CFLAGS="$(CFLAGS)" DEBIANLDFLAGS="$(LDFLAGS)" + dh_auto_build -- CFLAGS="$(CFLAGS)" DEBIANLDFLAGS="$(LDFLAGS)" + +override_dh_auto_test: + echo "There is no test suite provided but automatism is grabbing check.c for the check which fails." get-orig-source: sh debian/get-orig-source View it on GitLab: https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9 -- View it on GitLab: https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9 You're receiving this email because of your account on salsa.debian.org.
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