Andreas Tille pushed to branch master at Debian Med / pbh5tools
Commits: 6c273eb2 by Andreas Tille at 2018-07-13T16:02:43+02:00 d/watch: use git mode - - - - - 64cb3778 by Andreas Tille at 2018-07-13T16:02:43+02:00 New upstream version 0.8.0+git20170929.58d54ff+dfsg - - - - - b5389949 by Andreas Tille at 2018-07-13T16:02:43+02:00 debhelper 11 - - - - - 061deb56 by Andreas Tille at 2018-07-13T16:02:43+02:00 Point Vcs fields to salsa.debian.org - - - - - 6a7d29d8 by Andreas Tille at 2018-07-13T16:02:43+02:00 Standards-Version: 4.1.5 - - - - - fa682d15 by Andreas Tille at 2018-07-13T16:02:43+02:00 Build-Depends: python-h5py - - - - - f72e771d by Andreas Tille at 2018-07-13T16:06:54+02:00 DEP3 fixes, Upload to unstable - - - - - 7 changed files: - README.md - debian/changelog - debian/compat - debian/control - debian/patches/multiarch-module-path.patch - debian/patches/series - debian/watch Changes: ===================================== README.md ===================================== --- a/README.md +++ b/README.md @@ -4,3 +4,7 @@ Biosciences. Specifically, this package provides functionality for manipulating and extracting data from "cmp.h5" and "bas.h5" files. [Detailed documentation here](doc/index.rst). + +DISCLAIMER +---------- +THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES. ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,15 @@ +pbh5tools (0.8.0+git20170929.58d54ff+dfsg-1) unstable; urgency=medium + + * Team upload. + * d/watch: use git mode + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.1.5 + * Build-Depends: python-h5py + * DEP3 + + -- Andreas Tille <[email protected]> Fri, 13 Jul 2018 15:58:44 +0200 + pbh5tools (0.8.0+dfsg-5) unstable; urgency=medium * Rename source package to match primary binary package ===================================== debian/compat ===================================== --- a/debian/compat +++ b/debian/compat @@ -1 +1 @@ -9 +11 ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -1,28 +1,28 @@ Source: pbh5tools -Section: science -Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Afif Elghraoui <[email protected]> -Build-Depends: debhelper (>= 9), - dh-python, - python, - python-setuptools, - python-pbcore, - python-sphinx, +Section: science +Priority: optional +Build-Depends: debhelper (>= 11~), + dh-python, + python, + python-setuptools, + python-pbcore, + python-sphinx, python-nose, - python-cram, -Standards-Version: 3.9.7 + python-h5py, + python-cram +Standards-Version: 4.1.5 +Vcs-Browser: https://salsa.debian.org/med-team/pbh5tools +Vcs-Git: https://salsa.debian.org/med-team/pbh5tools.git Homepage: https://github.com/PacificBiosciences/pbh5tools -Vcs-Git: https://anonscm.debian.org/git/debian-med/pbh5tools.git -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbh5tools.git Package: pbh5tools Architecture: all -Depends: - ${misc:Depends}, - ${python:Depends}, - python-pbh5tools (>= ${binary:Version}), - python-pkg-resources, +Depends: ${misc:Depends}, + ${python:Depends}, + python-pbh5tools (>= ${binary:Version}), + python-pkg-resources Description: tools for manipulating Pacific Biosciences HDF5 files This package provides functionality for manipulating and extracting data from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers. @@ -32,11 +32,11 @@ Description: tools for manipulating Pacific Biosciences HDF5 files This package is part of the SMRTAnalysis suite. Package: python-pbh5tools -Section: python Architecture: any +Section: python Depends: ${shlibs:Depends}, - ${misc:Depends}, - ${python:Depends}, + ${misc:Depends}, + ${python:Depends} Description: tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library This package provides functionality for manipulating and extracting data from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers. @@ -47,11 +47,11 @@ Description: tools for manipulating Pacific Biosciences HDF5 files -- Python 2 l Python 2 backend library Package: python-pbh5tools-doc -Section: doc Architecture: all +Section: doc Depends: ${misc:Depends}, - libjs-jquery, - libjs-underscore + libjs-jquery, + libjs-underscore Description: tools for manipulating HDF5 files produced by Pacific Biosciences (doc) This package provides functionality for manipulating and extracting data from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers. ===================================== debian/patches/multiarch-module-path.patch ===================================== --- a/debian/patches/multiarch-module-path.patch +++ b/debian/patches/multiarch-module-path.patch @@ -1,3 +1,7 @@ +Author: Afif Elghraoui +Last-Update: 2016-03-20 00:45:22 -0700 +Description: Enable multiarch modules + --- python-pbh5tools.orig/pbh5tools/Indexer.py +++ python-pbh5tools/pbh5tools/Indexer.py @@ -32,10 +32,11 @@ ===================================== debian/patches/series ===================================== --- a/debian/patches/series +++ b/debian/patches/series @@ -5,3 +5,4 @@ override-test-failure.patch ignore-cram-results.patch fix-type-in-test.patch multiarch-module-path.patch +# enable-nosetests ===================================== debian/watch ===================================== --- a/debian/watch +++ b/debian/watch @@ -1,2 +1,5 @@ -# Upstream currently does not tag versions in their github repository -version=3 +version=4 + +# Upstream is not tagging releases regularly - thus we use mode=git +opts="mode=git,pretty=0.8.0+git%cd.%h,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ + https://github.com/PacificBiosciences/pbh5tools.git HEAD View it on GitLab: https://salsa.debian.org/med-team/pbh5tools/compare/ef127d989ed644755ae7f689327c182370c8a326...f72e771d24c21c2ec2f6d9dc284b94b76c927e04 -- View it on GitLab: https://salsa.debian.org/med-team/pbh5tools/compare/ef127d989ed644755ae7f689327c182370c8a326...f72e771d24c21c2ec2f6d9dc284b94b76c927e04 You're receiving this email because of your account on salsa.debian.org.
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