Dylan Aïssi pushed to branch master at Debian Med / plink1.9
Commits: 80f5c46f by Dylan Aïssi at 2018-08-03T05:43:55Z New upstream version 1.90~b6.3-180717 - - - - - 37a7d95a by Dylan Aïssi at 2018-08-03T05:43:58Z Merge tag 'upstream/1.90_b6.3-180717' Upstream version 1.90~b6.3-180717 - - - - - aea92491 by Dylan Aïssi at 2018-08-03T05:46:02Z Update d/changelogs - - - - - c6edf54d by Dylan Aïssi at 2018-08-03T05:54:01Z Bump Standards-Version: 4.2.0 (no changes needed) - - - - - 52649ac4 by Dylan Aïssi at 2018-08-03T05:56:59Z Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - debian/upstream.docs/upstream.changelog - plink.c - plink_set.c Changes: ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +plink1.9 (1.90~b6.3-180717-1) unstable; urgency=medium + + * New upstream release. + * Bump Standards-Version: 4.2.0 (no changes needed). + + -- Dylan Aïssi <[email protected]> Fri, 03 Aug 2018 07:44:29 +0200 + plink1.9 (1.90~b6.2-180612-1) unstable; urgency=medium * New upstream release. ===================================== debian/control ===================================== --- a/debian/control +++ b/debian/control @@ -8,7 +8,7 @@ Build-Depends: debhelper (>= 11~), libatlas-base-dev, liblapack-dev, zlib1g-dev -Standards-Version: 4.1.4 +Standards-Version: 4.2.0 Vcs-Browser: https://salsa.debian.org/med-team/plink1-9 Vcs-Git: https://salsa.debian.org/med-team/plink1-9.git Homepage: https://www.cog-genomics.org/plink/1.9/ ===================================== debian/upstream.docs/upstream.changelog ===================================== --- a/debian/upstream.docs/upstream.changelog +++ b/debian/upstream.docs/upstream.changelog @@ -1,6 +1,8 @@ # Copy/Paste from https://www.cog-genomics.org/plink/1.9/ -12 Jun 2018: "--assoc fisher"'s multiple testing corrections no longer treat zero-MAF variants as valid tests. +17 Jul 2018: Fixed uninitialized --make-set-border value bug. + +12 Jun: "--assoc fisher"'s multiple testing corrections no longer treat zero-MAF variants as valid tests. 28 May: Fixed --file triallelic-variant handling bug which occurred when the .map was unsorted. ===================================== plink.c ===================================== --- a/plink.c +++ b/plink.c @@ -93,7 +93,7 @@ static const char ver_str[] = #ifdef STABLE_BUILD - "PLINK v1.90b6.2" + "PLINK v1.90b6.3" #else "PLINK v1.90p" #endif @@ -105,7 +105,7 @@ static const char ver_str[] = #else " 32-bit" #endif - " (12 Jun 2018)"; + " (17 Jul 2018)"; static const char ver_str2[] = // include leading space if day < 10, so character length stays the same "" ===================================== plink_set.c ===================================== --- a/plink_set.c +++ b/plink_set.c @@ -25,12 +25,15 @@ void set_init(Set_info* sip, Annot_info* aip) { sip->subset_fname = nullptr; sip->merged_set_name = nullptr; sip->genekeep_flattened = nullptr; - sip->ct = 0; sip->modifier = 0; + // bugfix (17 Jul 2018): make_set_border not zero-initialized + sip->make_set_border = 0; sip->set_r2 = 0.5; sip->set_p = 0.05; sip->set_test_lambda = 0.0; sip->set_max = 5; + sip->ct = 0; + // sip->names, sip->setdefs not accessed if ct == 0 aip->fname = nullptr; aip->attrib_fname = nullptr; aip->ranges_fname = nullptr; View it on GitLab: https://salsa.debian.org/med-team/plink1-9/compare/e7f895321f49209ba13695af080dce89070c192e...52649ac487c085f55bfe80056c6e6ccc8f7bc503 -- View it on GitLab: https://salsa.debian.org/med-team/plink1-9/compare/e7f895321f49209ba13695af080dce89070c192e...52649ac487c085f55bfe80056c6e6ccc8f7bc503 You're receiving this email because of your account on salsa.debian.org.
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