Andreas Tille pushed to branch master at Debian Med / pilon
Commits:
e666094d by Andreas Tille at 2018-08-03T06:07:47Z
Fix packaging - thanks again to Markus Koschany
- - - - -
3 changed files:
- debian/control
- debian/manifest
- debian/rules
Changes:
=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 11~),
javahelper,
scala,
libhtsjdk-java
-Standards-Version: 4.1.4
+Standards-Version: 4.2.0
Vcs-Browser: https://salsa.debian.org/med-team/pilon
Vcs-Git: https://salsa.debian.org/med-team/pilon.git
Homepage: https://github.com/broadinstitute/pilon/wiki
@@ -15,7 +15,8 @@ Homepage: https://github.com/broadinstitute/pilon/wiki
Package: pilon
Architecture: all
Depends: ${misc:Depends},
- libhtsjdk-java
+ libhtsjdk-java,
+ libcommons-lang-java
Conflicts: pilon-non-free
Replaces: pilon-non-free
Description: automated genome assembly improvement and variant detection tool
=====================================
debian/manifest
=====================================
--- a/debian/manifest
+++ b/debian/manifest
@@ -1,4 +1,4 @@
usr/share/java/pilon.jar:
Main-Class: org.broadinstitute.pilon.Pilon
Manifest-Version: 1.0
- Class-Path: /usr/share/java/htsjdk.jar
+ Class-Path: /usr/share/java/htsjdk.jar /usr/share/java/scala-library.jar
/usr/share/java/commons-lang.jar
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -8,3 +8,6 @@ export LC_ALL=C.UTF-8
override_dh_auto_build:
scalac -classpath /usr/share/java/htsjdk.jar -d pilon.jar
src/main/scala/org/broadinstitute/pilon/*
+
+override_jh_depends:
+ # do nothing here
View it on GitLab:
https://salsa.debian.org/med-team/pilon/commit/e666094d03e0f3011551fa4adbd20b1b212f6f9e
--
View it on GitLab:
https://salsa.debian.org/med-team/pilon/commit/e666094d03e0f3011551fa4adbd20b1b212f6f9e
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