Andreas Tille pushed to branch master at Debian Med / spoa
Commits: 5805c3ed by Andreas Tille at 2018-10-19T05:52:38Z Fix symbols file - - - - - 4e22c0f3 by Andreas Tille at 2018-10-19T05:53:30Z Standards-Version: 4.2.1 - - - - - f9d112d5 by Andreas Tille at 2018-10-19T07:02:03Z Add build-time test - - - - - b8e6b910 by Andreas Tille at 2018-10-19T07:04:22Z Add autopkgtest - - - - - db0c004d by Andreas Tille at 2018-10-19T07:09:35Z Fix test and upload to unstable - - - - - 9 changed files: - + debian/README.test - debian/changelog - debian/control - debian/libspoa1.1.3.symbols - debian/rules - + debian/spoa.docs - + debian/spoa.examples - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +spoa (1.1.3-2) unstable; urgency=medium + + * Fix symbols file + Closes: #905387 + * Standards-Version: 4.2.1 + * Add build-time test + * Add autopkgtest + + -- Andreas Tille <[email protected]> Fri, 19 Oct 2018 09:04:34 +0200 + spoa (1.1.3-1) unstable; urgency=medium * Initial release (Closes: #901145) ===================================== debian/control ===================================== @@ -9,8 +9,8 @@ Build-Depends: debhelper (>= 11~), rename, libbioparser-dev, libgtest-dev, - zlib1g-dev (>= 1.2.11~) -Standards-Version: 4.1.4 + zlib1g-dev +Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/spoa Vcs-Git: https://salsa.debian.org/med-team/spoa.git Homepage: https://github.com/rvaser/spoa ===================================== debian/libspoa1.1.3.symbols ===================================== @@ -66,8 +66,7 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER# _ZNK4spoa5Graph23is_topologically_sortedEv@Base 1.1.3 _ZNK4spoa5Graph38initialize_multiple_sequence_alignmentERSt6vectorIjSaIjEE@Base 1.1.3 _ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE@Base 1.1.3 - _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEE@Base 1.1.3 - _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base 1.1.3 + _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEED1Ev@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEED2Ev@Base 1.1.3 @@ -89,6 +88,7 @@ libspoa.so.1.1.3 libspoa1.1.3 #MINVER# _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3 _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3 _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3 + _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJjjEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.3 _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3 _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3 ===================================== debian/rules ===================================== @@ -24,3 +24,9 @@ override_dh_install: --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/$(DEB_HOST_MULTIARCH) \ debian/tmp/usr/lib/*/*.so + +override_dh_auto_test: +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) + `find . -name spoa_test` + `find . -name spoa | grep bin` test/data/sample.fastq +endif ===================================== debian/spoa.docs ===================================== @@ -0,0 +1 @@ +debian/tests/run-unit-test ===================================== debian/spoa.examples ===================================== @@ -0,0 +1 @@ +test/data/* ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,17 @@ +#!/bin/bash +set -e + +pkg=spoa + +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP + +cd $AUTOPKGTEST_TMP + +gunzip -r * + +spoa sample.fastq View it on GitLab: https://salsa.debian.org/med-team/spoa/compare/dcddfa283249108cc9eca21661f710e6733dd10e...db0c004d249cee1863a40d572ea52a705a14ee12 -- View it on GitLab: https://salsa.debian.org/med-team/spoa/compare/dcddfa283249108cc9eca21661f710e6733dd10e...db0c004d249cee1863a40d572ea52a705a14ee12 You're receiving this email because of your account on salsa.debian.org.
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