Jelmer Vernooij pushed to branch master at Debian Med / beast-mcmc
Commits: a8c2b641 by Jelmer Vernooij at 2018-10-20T13:10:24Z Use secure copyright file specification URI. Fixes lintian: insecure-copyright-format-uri See https://lintian.debian.org/tags/insecure-copyright-format-uri.html for more details. - - - - - f6fcfdf8 by Jelmer Vernooij at 2018-10-20T13:10:25Z Trim trailing whitespace. Fixes lintian: file-contains-trailing-whitespace See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details. - - - - - 3 changed files: - debian/changelog - debian/control - debian/copyright Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,15 @@ beast-mcmc (1.10.0+dfsg-1) UNRELEASED; urgency=medium + [ Andreas Tille ] * New upstream version * Exclude Latex doc creation * New Build-Depends: libejml-java * New versioned Build-Depends: libhmsbeagle-java (>= 3.0.2) + [ Jelmer Vernooij ] + * Use secure copyright file specification URI. + * Trim trailing whitespace. + -- Andreas Tille <[email protected]> Thu, 21 Jun 2018 17:50:40 +0200 beast-mcmc (1.8.4+dfsg.1-3) unstable; urgency=medium ===================================== debian/control ===================================== @@ -41,14 +41,14 @@ Depends: ${shlibs:Depends}, libnetlib-java Suggests: beast-mcmc-doc Description: Bayesian MCMC phylogenetic inference - BEAST is a cross-platform program for Bayesian MCMC analysis of molecular - sequences. It is entirely orientated towards rooted, time-measured + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It - can be used as a method of reconstructing phylogenies but is also a - framework for testing evolutionary hypotheses without conditioning on a - single tree topology. BEAST uses MCMC to average over tree space, so that - each tree is weighted proportional to its posterior probability. Included - is a simple to use user-interface program for setting up standard + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. Package: libnucleotidelikelihoodcore0 @@ -60,14 +60,14 @@ Conflicts: beast-mcmc-lib Provides: beast-mcmc-lib Replaces: beast-mcmc-lib Description: implementation of LikelihoodCore for nucleotides used by beast-mcmc - BEAST is a cross-platform program for Bayesian MCMC analysis of molecular - sequences. It is entirely orientated towards rooted, time-measured + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It - can be used as a method of reconstructing phylogenies but is also a - framework for testing evolutionary hypotheses without conditioning on a - single tree topology. BEAST uses MCMC to average over tree space, so that - each tree is weighted proportional to its posterior probability. Included - is a simple to use user-interface program for setting up standard + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. . This package provides an implementation of LikelihoodCore for nucleotides @@ -80,14 +80,14 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Enhances: beast-mcmc Description: Bayesian MCMC phylogenetic inference - example data - BEAST is a cross-platform program for Bayesian MCMC analysis of molecular - sequences. It is entirely orientated towards rooted, time-measured + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It - can be used as a method of reconstructing phylogenies but is also a - framework for testing evolutionary hypotheses without conditioning on a - single tree topology. BEAST uses MCMC to average over tree space, so that - each tree is weighted proportional to its posterior probability. Included - is a simple to use user-interface program for setting up standard + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. . This package contains the example data. @@ -99,14 +99,14 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Enhances: beast-mcmc Description: Bayesian MCMC phylogenetic inference - documentation - BEAST is a cross-platform program for Bayesian MCMC analysis of molecular - sequences. It is entirely orientated towards rooted, time-measured + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It - can be used as a method of reconstructing phylogenies but is also a - framework for testing evolutionary hypotheses without conditioning on a - single tree topology. BEAST uses MCMC to average over tree space, so that - each tree is weighted proportional to its posterior probability. Included - is a simple to use user-interface program for setting up standard + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. . This package contains the documentation. ===================================== debian/copyright ===================================== @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: BEAST-MCMC Upstream-Contact: Alexei Drummond <[email protected]>, Andrew Rambaut <[email protected]> View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/compare/0c0477f2763e17d49fcd1fe5ebb3105ff422ee6d...f6fcfdf8e0dde2507bae3adda7a7782f2e8c0a41 -- View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/compare/0c0477f2763e17d49fcd1fe5ebb3105ff422ee6d...f6fcfdf8e0dde2507bae3adda7a7782f2e8c0a41 You're receiving this email because of your account on salsa.debian.org.
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