Jelmer Vernooij pushed to branch master at Debian Med / beast2-mcmc
Commits: 2a45cc6f by Jelmer Vernooij at 2018-10-20T13:11:25Z Use secure copyright file specification URI. Fixes lintian: insecure-copyright-format-uri See https://lintian.debian.org/tags/insecure-copyright-format-uri.html for more details. - - - - - 333d6547 by Jelmer Vernooij at 2018-10-20T13:11:25Z Trim trailing whitespace. Fixes lintian: file-contains-trailing-whitespace See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details. - - - - - 3 changed files: - debian/changelog - debian/control - debian/copyright Changes: ===================================== debian/changelog ===================================== @@ -3,7 +3,7 @@ beast2-mcmc (2.5.1+dfsg-1) UNRELEASED; urgency=medium [ Steffen Moeller ] * d/u/metadata: - added RRIDs - - yamllint cleanliness + - yamllint cleanliness [ Andreas Tille ] * New upstream version @@ -15,6 +15,10 @@ beast2-mcmc (2.5.1+dfsg-1) UNRELEASED; urgency=medium * d/rules: Add antlr4-runtime.jar to CLASS_PATH * Standards-Version: 4.2.1 + [ Jelmer Vernooij ] + * Use secure copyright file specification URI. + * Trim trailing whitespace. + -- Andreas Tille <[email protected]> Mon, 15 Oct 2018 10:03:36 +0200 beast2-mcmc (2.4.4+dfsg-1) unstable; urgency=medium ===================================== debian/control ===================================== @@ -31,14 +31,14 @@ Depends: ${shlibs:Depends}, default-jre | java9-runtime Suggests: beast2-mcmc-doc Description: Bayesian MCMC phylogenetic inference - BEAST is a cross-platform program for Bayesian MCMC analysis of molecular - sequences. It is entirely orientated towards rooted, time-measured + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It - can be used as a method of reconstructing phylogenies but is also a - framework for testing evolutionary hypotheses without conditioning on a - single tree topology. BEAST uses MCMC to average over tree space, so that - each tree is weighted proportional to its posterior probability. Included - is a simple to use user-interface program for setting up standard + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. . This is no new upstream version of beast-mcmc (1.x) but rather a rewritten @@ -51,14 +51,14 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Enhances: beast2-mcmc Description: Bayesian MCMC phylogenetic inference - example data - BEAST is a cross-platform program for Bayesian MCMC analysis of molecular - sequences. It is entirely orientated towards rooted, time-measured + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It - can be used as a method of reconstructing phylogenies but is also a - framework for testing evolutionary hypotheses without conditioning on a - single tree topology. BEAST uses MCMC to average over tree space, so that - each tree is weighted proportional to its posterior probability. Included - is a simple to use user-interface program for setting up standard + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. . This package contains the example data. @@ -70,14 +70,14 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Enhances: beast2-mcmc Description: Bayesian MCMC phylogenetic inference - documentation - BEAST is a cross-platform program for Bayesian MCMC analysis of molecular - sequences. It is entirely orientated towards rooted, time-measured + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It - can be used as a method of reconstructing phylogenies but is also a - framework for testing evolutionary hypotheses without conditioning on a - single tree topology. BEAST uses MCMC to average over tree space, so that - each tree is weighted proportional to its posterior probability. Included - is a simple to use user-interface program for setting up standard + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. . This package contains the documentation. ===================================== debian/copyright ===================================== @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: beast2 Upstream-Contact: Alexei Drummond <[email protected]>, Andrew Rambaut <[email protected]> View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/compare/694dc530e0aa4d4c9162348a5051501d8e385c98...333d65474cdce66230482a44c9bf6beff7a2b6e5 -- View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/compare/694dc530e0aa4d4c9162348a5051501d8e385c98...333d65474cdce66230482a44c9bf6beff7a2b6e5 You're receiving this email because of your account on salsa.debian.org.
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