Andreas Tille pushed to branch master at Debian Med / proalign
Commits: f7f9ab7b by Andreas Tille at 2018-10-23T15:29:21Z Drop unneeded get-orig-source target - - - - - da661ace by Andreas Tille at 2018-10-23T15:53:09Z Use jh_build - - - - - c6f16626 by Andreas Tille at 2018-10-23T15:53:30Z debhelper 11 - - - - - a753b9d6 by Andreas Tille at 2018-10-23T15:53:32Z Point Vcs fields to salsa.debian.org - - - - - ae4c38af by Andreas Tille at 2018-10-23T15:53:32Z Standards-Version: 4.2.1 - - - - - 22641f14 by Andreas Tille at 2018-10-23T16:08:28Z Fix main-class in manifest - - - - - 4018e506 by Andreas Tille at 2018-10-23T16:19:18Z Add non-functional test template - needs sensibly usable data - - - - - 9 changed files: - debian/changelog - debian/compat - debian/control - − debian/manifest.txt - debian/proalign.install - debian/rules - debian/scripts/proalign - + debian/tests/control_ - + debian/tests/run-unit-test Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +proalign (0.603-4) UNRELEASED; urgency=medium + + * Drop unneeded get-orig-source target + * Use jh_build + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.2.1 + + -- Andreas Tille <[email protected]> Tue, 23 Oct 2018 17:28:44 +0200 + proalign (0.603-3) unstable; urgency=medium * Moved packaging from SVN to Git ===================================== debian/compat ===================================== @@ -1 +1 @@ -10 +11 ===================================== debian/control ===================================== @@ -4,11 +4,12 @@ Uploaders: Andreas Tille <[email protected]>, Thorsten Alteholz <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 10), +Build-Depends: debhelper (>= 11~), + javahelper, default-jdk -Standards-Version: 4.1.1 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/proalign.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/proalign.git +Standards-Version: 4.2.1 +Vcs-Browser: https://salsa.debian.org/med-team/proalign +Vcs-Git: https://salsa.debian.org/med-team/proalign.git Homepage: http://ueg.ulb.ac.be/ProAlign/ Package: proalign ===================================== debian/manifest.txt deleted ===================================== @@ -1,3 +0,0 @@ -Manifest-version: 1.0 -Main-Class: proalign.ProAlign - ===================================== debian/proalign.install ===================================== @@ -1,3 +1,3 @@ debian/scripts/proalign usr/bin -build/ProAlign.jar usr/share/proalign +proalign.jar usr/share/proalign ===================================== debian/rules ===================================== @@ -6,12 +6,4 @@ dh $@ override_dh_auto_build: - mkdir -p build - javac -d ./build *.java - (cd build; jar cmvf ../debian/manifest.txt ProAlign.jar *) - #(cd build; jar cmvf ../debian/manifest.txt ProAlign.jar proalign/ProAlign.class proalign/OutFile.class) - -get-orig-source: - mkdir -p ../tarballs - uscan --verbose --force-download --destdir=../tarballs - + jh_build --main=proalign.ProAlign proalign.jar . ===================================== debian/scripts/proalign ===================================== @@ -9,13 +9,11 @@ else fi if [ -x /usr/share/proalign ]; then - if [ -r /usr/share/proalign/ProAlign.jar ]; then - #cd /usr/share/proalign && $java -jar ProAlign.jar - $java -jar /usr/share/proalign/ProAlign.jar $PARA + if [ -r /usr/share/proalign/proalign.jar ]; then + $java -jar /usr/share/proalign/proalign.jar $PARA else - echo "Could not find /usr/share/proalign/ProAlign.jar" + echo "Could not find /usr/share/proalign/proalign.jar" fi else echo "Could not find /usr/share/proalign directory." fi - ===================================== debian/tests/control_ ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,20 @@ +#!/bin/bash + +echo "TODO: find sample data prim.fas and prim.tre" +echo "see http://ueg.ulb.ac.be/ProAlign/main.html#command"; +exit 1 + +set -e + +pkg=proalign + +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP + +cd $AUTOPKGTEST_TMP + +proalign -nogui -seqfile=prim.fas -treefile=prim.tre -outfile=prim.pir -outformat=pir View it on GitLab: https://salsa.debian.org/med-team/proalign/compare/2b0d11b606c7b5a2c3311777379c7c2500912242...4018e50636487ae29e96470a8e5e491c22a55bf4 -- View it on GitLab: https://salsa.debian.org/med-team/proalign/compare/2b0d11b606c7b5a2c3311777379c7c2500912242...4018e50636487ae29e96470a8e5e491c22a55bf4 You're receiving this email because of your account on salsa.debian.org.
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