Andreas Tille pushed to branch master at Debian Med / bioperl
Commits: 26d7b933 by Andreas Tille at 2018-10-27T16:01:56Z debhelper 11 - - - - - 20243d3e by Andreas Tille at 2018-10-27T16:02:14Z Point Vcs fields to salsa.debian.org - - - - - 9f2bdf29 by Andreas Tille at 2018-10-27T16:02:14Z Standards-Version: 4.2.1 - - - - - 2ba3b4bd by Andreas Tille at 2018-10-27T16:02:14Z Remove trailing whitespace in debian/changelog - - - - - 17b4cfd4 by Andreas Tille at 2018-10-27T16:02:14Z Remove trailing whitespace in debian/copyright - - - - - b61ad219 by Andreas Tille at 2018-10-27T16:02:14Z Remove trailing whitespace in debian/rules - - - - - 0ae27211 by Andreas Tille at 2018-10-27T22:38:50Z Fix Perl interpreter path - - - - - bc4e7d04 by Andreas Tille at 2018-10-27T22:46:46Z Fix URL for source download - - - - - 9e1b7c89 by Andreas Tille at 2018-10-27T22:51:37Z Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/compat - debian/control - debian/copyright - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,16 @@ +bioperl (1.7.2-3) unstable; urgency=medium + + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.2.1 + * Remove trailing whitespace in debian/changelog + * Remove trailing whitespace in debian/copyright + * Remove trailing whitespace in debian/rules + * Fix Perl interpreter path + * Fix URL for source download + + -- Andreas Tille <[email protected]> Sun, 28 Oct 2018 00:46:56 +0200 + bioperl (1.7.2-2) unstable; urgency=medium * Team upload @@ -87,7 +100,7 @@ bioperl (1.6.924-3) unstable; urgency=medium bioperl (1.6.924-2) unstable; urgency=medium * d/control: add perl-modules for perl 5.22 transition - (Closes: #790305). + (Closes: #790305). -- Olivier Sallou <[email protected]> Mon, 29 Jun 2015 09:05:22 +0200 @@ -112,7 +125,7 @@ bioperl (1.6.922-1) unstable; urgency=low * New upstream release. * Replaces and Breaks grinder (<< 0.5.3-3~) because of overlaping contents. Closes: #722910 - * Stop Replacing and Breaking bioperl ( << 1.6.9 ): not needed anymore. + * Stop Replacing and Breaking bioperl ( << 1.6.9 ): not needed anymore. -- Charles Plessy <[email protected]> Sun, 22 Sep 2013 13:39:48 +0900 @@ -121,7 +134,7 @@ bioperl (1.6.920-1) unstable; urgency=low * New upstream release (Closes: #720776) * Adjusted Depends and Recommends (4 additions). * Removed patch ‘fix_berkeleydb3_temp_file_creation’ applied upstream. - * Use canonical VCS URLs. + * Use canonical VCS URLs. -- Charles Plessy <[email protected]> Sun, 08 Sep 2013 20:56:00 +0900 @@ -139,7 +152,7 @@ bioperl (1.6.901-3) unstable; urgency=low * Team upload. [ Olivier Sallou ] + add patch fix_berkeleydb3_temp_file_creation (Closes: #661793). - Fixed upstream for next release. + Fixed upstream for next release. * debian/control: update Standards version * debian/copyright: update Format to latest officiel URL v1.0 * debian/patches/fix_examples_perl_location: fix wrong perl location @@ -265,7 +278,7 @@ bioperl (1.6.0-1) experimental; urgency=low /usr/share/doc/bioperl. * debian/control: - fields values rewrapped to easily spot diffs in commit mails - - dropped B-D-I versioning on perl, since Etch already has a greater + - dropped B-D-I versioning on perl, since Etch already has a greater version - Standards-Version bumped to 3.8.0 (no changes needed). @@ -403,7 +416,7 @@ bioperl (0.7.0-1) unstable; urgency=low bioperl (0.05.1-3) unstable; urgency=low - * Fixed compliance with perl policy; closes: #95880, #95418 + * Fixed compliance with perl policy; closes: #95880, #95418 -- Dr. Guenter Bechly <[email protected]> Tue, 1 May 2001 08:13:09 +0200 ===================================== debian/compat ===================================== @@ -1 +1 @@ -10 +11 ===================================== debian/control ===================================== @@ -7,9 +7,9 @@ Uploaders: Charles Plessy <[email protected]>, Section: science Testsuite: autopkgtest-pkg-perl Priority: optional -Build-Depends: debhelper (>= 10), +Build-Depends: debhelper (>= 11~), # Unnecessary according to lintian, but building with sbuild shows the contrary. - libmodule-build-perl (>= 0.420000) | perl (<< 5.19.0), + libmodule-build-perl (>= 0.420000) | perl (<< 5.19.0) Build-Depends-Indep: perl, rename, libio-string-perl, @@ -55,9 +55,9 @@ Build-Depends-Indep: perl, libwww-perl, # Needed to avoid downloading DTDs during the tests and therefore fail when network is not available: libxml-sax-expatxs-perl -Standards-Version: 4.1.2 -Vcs-Browser: https://anonscm.debian.org/git/debian-med/bioperl.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/bioperl.git +Standards-Version: 4.2.1 +Vcs-Browser: https://salsa.debian.org/med-team/bioperl +Vcs-Git: https://salsa.debian.org/med-team/bioperl.git Homepage: http://www.bioperl.org/ Package: bioperl ===================================== debian/copyright ===================================== @@ -1,5 +1,5 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Source: http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.923.tar.gz +Source: https://metacpan.org/release/BioPerl Files: * Copyright: The Bioperl developers. @@ -139,13 +139,13 @@ Comment: license, which means that you are not required to submit the code fixes, but in the spirit of making a better product we hope you'll contribute back to the community any insight or code improvements. - . + . * Please include the AUTHORS file and ascribe credit to the original BioPerl toolkit where appropriate. - . + . * If you are an academic and you use the software, please cite the article. See the BioPerl publications for a list of papers which describe components in - the toolkit. + the toolkit. URL: see http://www.bioperl.org/wiki/Licensing_BioPerl Files: t/lib/Error.pm ===================================== debian/rules ===================================== @@ -22,7 +22,10 @@ override_dh_install: chmod 644 debian/libbio-perl-perl/usr/share/perl5/Bio/DB/HIV/lanl-schema.xml override_dh_installchangelogs: - dh_installchangelogs Changes + dh_installchangelogs Changes override_dh_installexamples: dh_installexamples examples/* + for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ + sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \ + done View it on GitLab: https://salsa.debian.org/med-team/bioperl/compare/47da525b82ad2ac904bc226167e8bcd86fde7d73...9e1b7c8965e703206db00a5f8cccf9d6deadfa8c -- View it on GitLab: https://salsa.debian.org/med-team/bioperl/compare/47da525b82ad2ac904bc226167e8bcd86fde7d73...9e1b7c8965e703206db00a5f8cccf9d6deadfa8c You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
