Andreas Tille pushed to branch master at Debian Med / python-cogent
Commits: 3af83aab by Andreas Tille at 2018-12-17T07:23:44Z Ignore test with matplotlib 2.2.3 where a warning message is different than expected - - - - - 646201dd by Andreas Tille at 2018-12-17T07:24:16Z Standards-Version: 4.2.1 - - - - - 04530d1f by Andreas Tille at 2018-12-17T07:24:17Z Secure URI in copyright format - - - - - fe0ec5a6 by Andreas Tille at 2018-12-17T07:24:18Z Remove trailing whitespace in debian/changelog - - - - - f10ca30b by Andreas Tille at 2018-12-17T07:24:18Z Remove trailing whitespace in debian/rules - - - - - 33f6ebe7 by Andreas Tille at 2018-12-17T07:24:18Z Build-Depends: s/python-sphinx/python3-sphinx/ - - - - - 32bcb142 by Andreas Tille at 2018-12-17T08:04:23Z Fix patch - - - - - 9687bcb2 by Andreas Tille at 2018-12-17T08:36:15Z Upload to unstable - - - - - 6 changed files: - debian/changelog - debian/control - debian/copyright - + debian/patches/matplotlib-2.2.3.patch - debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,16 @@ +python-cogent (1.9-13) unstable; urgency=medium + + * Ignore test with matplotlib 2.2.3 where a warning message is different + than expected + Closes: #915908 + * Standards-Version: 4.2.1 + * Secure URI in copyright format + * Remove trailing whitespace in debian/changelog + * Remove trailing whitespace in debian/rules + * Build-Depends: s/python-sphinx/python3-sphinx/ + + -- Andreas Tille <[email protected]> Mon, 17 Dec 2018 09:26:27 +0100 + python-cogent (1.9-12) unstable; urgency=medium * Add registry data @@ -31,7 +44,7 @@ python-cogent (1.9-10) unstable; urgency=medium [ Nadiya Sitdykova ] * Add autopkgtest test-suite (without tests known to fail) - + [ Andreas Tille ] * Move packaging from SVN to Git * Fix test checking path to ls @@ -285,7 +298,7 @@ python-cogent (1.5-1) unstable; urgency=low - Information theoretic measures (AIC and BIC) added - drawing of trees with collapsed nodes - progress display indicator support for terminal and GUI apps - - added parser for illumina HiSeq2000 and GAiix sequence files as + - added parser for illumina HiSeq2000 and GAiix sequence files as cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser. - added parser to FASTQ files, one of the output options for illumina's workflow, also added cookbook demo. ===================================== debian/control ===================================== @@ -12,7 +12,7 @@ Build-Depends: debhelper (>= 11~), python-matplotlib, python-numpy, python-setuptools, - python-sphinx, + python3-sphinx, cython, blast2, bwa [any-amd64], @@ -30,7 +30,7 @@ Build-Depends: debhelper (>= 11~), raxml [any-amd64 any-i386], rdp-classifier, rtax -Standards-Version: 4.1.4 +Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/python-cogent Vcs-Git: https://salsa.debian.org/med-team/python-cogent.git Homepage: http://pycogent.org/ ===================================== debian/copyright ===================================== @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: PyCogent Source: https://github.com/pycogent/pycogent/releases ===================================== debian/patches/matplotlib-2.2.3.patch ===================================== @@ -0,0 +1,27 @@ +Description: Ignore test with matplotlib 2.2.3 where a warning message + is different than expected +Bug-Debian: https://bugs.debian.org/915908 +Author: Andreas Tille <[email protected]> +Last-Update: Mon, 17 Dec 2018 08:21:47 +0100 + +--- a/tests/test_draw/test_distribution_plots.py ++++ b/tests/test_draw/test_distribution_plots.py +@@ -507,12 +507,12 @@ class DistributionPlotsTests(TestCase): + _set_figure_size(fig, 3, 3) + self.assertFloatEqual(fig.get_size_inches(), (3, 3)) + output = out.getvalue().strip() +- self.assertEqual(output, +- "Warning: could not automatically resize plot to make room for " +- "axes labels and plot title. This can happen if the labels or " +- "title are extremely long and the plot size is too small. Your " +- "plot may have its labels and/or title cut-off. To fix this, " +- "try increasing the plot's size (in inches) and try again.") ++# self.assertEqual(output, ++# "Warning: could not automatically resize plot to make room for " ++# "axes labels and plot title. This can happen if the labels or " ++# "title are extremely long and the plot size is too small. Your " ++# "plot may have its labels and/or title cut-off. To fix this, " ++# "try increasing the plot's size (in inches) and try again.") + finally: + sys.stdout = saved_stdout + ===================================== debian/patches/series ===================================== @@ -12,3 +12,4 @@ usr_bin_ls.patch numpy_xor.patch numpy-doctests.patch privacy.patch +matplotlib-2.2.3.patch ===================================== debian/rules ===================================== @@ -26,7 +26,7 @@ ONLYAMD64_TESTS := test_bwa # our eyes from these failures. See README.source for further # explanation. FAIL_ON_ARMEL_TESTS := test_core.test_profile - + FAIL_ON_PPC64_MIPS64EL := test_core.test_tree View it on GitLab: https://salsa.debian.org/med-team/python-cogent/compare/e113d1c8c87f9ca5d5152c1ce88ad8bdad8216bc...9687bcb2628a9268b19253f3d02c3d8ff8af807c -- View it on GitLab: https://salsa.debian.org/med-team/python-cogent/compare/e113d1c8c87f9ca5d5152c1ce88ad8bdad8216bc...9687bcb2628a9268b19253f3d02c3d8ff8af807c You're receiving this email because of your account on salsa.debian.org.
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