Andreas Tille pushed to branch master at Debian Med / kraken
Commits: 556316d3 by Andreas Tille at 2019-01-07T12:06:08Z Point Vcs fields to salsa.debian.org - - - - - 280fe4d4 by Andreas Tille at 2019-01-07T12:06:08Z Standards-Version: 4.3.0 - - - - - 863875d3 by Andreas Tille at 2019-01-07T12:12:07Z Fix Perl interpreter path - - - - - 4146dec3 by Andreas Tille at 2019-01-07T12:15:26Z propagate build options - - - - - f0e9bb63 by Andreas Tille at 2019-01-07T12:17:21Z Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/hardening.patch - debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,9 +1,16 @@ -kraken (1.1-3) UNRELEASED; urgency=medium +kraken (1.1-3) unstable; urgency=medium + [ Jelmer Vernooij ] * Trim trailing whitespace. * Use secure copyright file specification URI. - -- Jelmer Vernooij <[email protected]> Wed, 24 Oct 2018 21:58:35 +0000 + [ Andreas Tille ] + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.3.0 + * Fix Perl interpreter path + * propagate build options + + -- Andreas Tille <[email protected]> Mon, 07 Jan 2019 13:15:32 +0100 kraken (1.1-2) unstable; urgency=medium ===================================== debian/control ===================================== @@ -5,9 +5,9 @@ Section: science Priority: optional Build-Depends: debhelper (>= 11~), jellyfish1 -Standards-Version: 4.1.3 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/kraken.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/kraken.git +Standards-Version: 4.3.0 +Vcs-Browser: https://salsa.debian.org/med-team/kraken +Vcs-Git: https://salsa.debian.org/med-team/kraken.git Homepage: http://ccb.jhu.edu/software/kraken/ Package: kraken ===================================== debian/patches/hardening.patch ===================================== @@ -0,0 +1,13 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Mon, 07 Jan 2019 13:14:41 +0100 +Description: propagate build options + +--- a/src/Makefile ++++ b/src/Makefile +@@ -1,5 +1,5 @@ + CXX = g++ +-CXXFLAGS = -Wall -fopenmp -O3 ++CXXFLAGS += -Wall -fopenmp -O3 + PROGS = db_sort set_lcas classify make_seqid_to_taxid_map db_shrink kmer_estimator + + .PHONY: all install clean ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ use_jellyfish1.patch kraken_tmp_dir.patch fix_reading_fasta.patch +hardening.patch ===================================== debian/rules ===================================== @@ -20,3 +20,9 @@ override_dh_link: override_dh_auto_install: dh_auto_install -- KRAKEN_DIR=$(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/$(DEB_SOURCE) ./install_kraken.sh /usr/lib/$(DEB_SOURCE) $(DEB_SOURCE) + +override_dh_install: + dh_install + for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ + sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \ + done View it on GitLab: https://salsa.debian.org/med-team/kraken/compare/1a4a832b8e7add54b28f8e3ff6d24cc2d58e6e9c...f0e9bb633f414e07079591e9d3a633e047a3e1cd -- View it on GitLab: https://salsa.debian.org/med-team/kraken/compare/1a4a832b8e7add54b28f8e3ff6d24cc2d58e6e9c...f0e9bb633f414e07079591e9d3a633e047a3e1cd You're receiving this email because of your account on salsa.debian.org.
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