Andreas Tille pushed to branch master at Debian Med / unanimity
Commits: e707cab2 by Andreas Tille at 2019-01-24T10:39:12Z New upstream version 3.3.0+dfsg - - - - - 4d2777c0 by Andreas Tille at 2019-01-24T10:39:16Z Update upstream source from tag 'upstream/3.3.0+dfsg' Update to upstream version '3.3.0+dfsg' with Debian dir 4b1658e32c42081456b3079ebbf8416d73965b92 - - - - - 29179079 by Andreas Tille at 2019-01-24T10:39:16Z New upstream version - - - - - b4704009 by Andreas Tille at 2019-01-24T10:39:16Z debhelper 12 - - - - - 22f2bf24 by Andreas Tille at 2019-01-24T10:40:05Z Standards-Version: 4.3.0 - - - - - 1be08032 by Andreas Tille at 2019-01-24T10:50:24Z Upload to unstable - - - - - 4 changed files: - README.md - debian/changelog - debian/compat - debian/control Changes: ===================================== README.md ===================================== @@ -6,21 +6,10 @@ *** ## Availability -The latest pre-release, developers-only linux binaries can be installed via [bioconda](https://bioconda.github.io/). +Latest `ccs` can be installed via bioconda package `pbccs`. - conda install pbccs - -These binaries are not ISO compliant. -For research only. -Not for use in diagnostics procedures. - -Official support is only provided for official and stable -[SMRT Analysis builds](http://www.pacb.com/products-and-services/analytical-software/) -provided by PacBio. -No support for source builds. -No support via mail to developers. - -Binaries on bioconda are newer than GitHub source code. +Please refer to our [official pbbioconda page](https://github.com/PacificBiosciences/pbbioconda) +for information on Installation, Support, License, Copyright, and Disclaimer. ## [Circular Consensus Calling](doc/PBCCS.md) @@ -51,6 +40,17 @@ and place them in a subdirectory of `${SMRT_CHEMISTRY_BUNDLE_DIR}`: This will cause Unanimity to try to load models from all files in `${SMRT_CHEMISTRY_BUNDLE_DIR}/arrow` with a `.json` suffix. +## Changelog + + * **3.3.0**: + * Add a windowing approach to reduce computational complexity from quadratic to linear + * Improve multi-threading framework to increase throughput + * Enhance XML output, propagate `CollectionMetadata` + * Includes latest chemistry parameters + * 3.1.0: + * Add `--maxPoaCoverage` to decrease runtime for unpolished output, special parameter for IsoSeq workflow + * Chemistry parameters for SMRT Link v6.0 + ## License [PacBio open source license](LICENSE) ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +unanimity (3.3.0+dfsg-1) unstable; urgency=medium + + * New upstream version + * debhelper 12 + * Standards-Version: 4.3.0 + + -- Andreas Tille <[email protected]> Thu, 24 Jan 2019 11:40:05 +0100 + unanimity (3.1.0+dfsg-1) unstable; urgency=medium * Initial release (Closes: #847310) ===================================== debian/compat ===================================== @@ -1 +1 @@ -11 +12 ===================================== debian/control ===================================== @@ -5,7 +5,7 @@ Uploaders: Afif Elghraoui <[email protected]>, Section: science Testsuite: autopkgtest-pkg-python Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper (>= 12~), dh-python, cmake, swig, @@ -18,7 +18,7 @@ Build-Depends: debhelper (>= 11~), libpbcopper-dev, libseqan2-dev, pandoc -Standards-Version: 4.2.1 +Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/unanimity Vcs-Git: https://salsa.debian.org/med-team/unanimity.git Homepage: https://github.com/PacificBiosciences/unanimity View it on GitLab: https://salsa.debian.org/med-team/unanimity/compare/84620b81de797af1dd539723fd3914284e4a0abb...1be0803202feeba740dd461c1a250a2040575a59 -- View it on GitLab: https://salsa.debian.org/med-team/unanimity/compare/84620b81de797af1dd539723fd3914284e4a0abb...1be0803202feeba740dd461c1a250a2040575a59 You're receiving this email because of your account on salsa.debian.org.
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