Andreas Tille pushed to branch upstream at Debian Med / htsjdk
Commits: cfc2c703 by Andreas Tille at 2019-01-24T16:31:37Z New upstream version 2.18.2+dfsg - - - - - 30 changed files: - src/main/java/htsjdk/samtools/BAMFileReader.java - + src/main/java/htsjdk/samtools/BAMSBIIndexer.java - src/main/java/htsjdk/samtools/CRAMIterator.java - src/main/java/htsjdk/samtools/SAMSequenceRecord.java - src/main/java/htsjdk/samtools/SAMUtils.java - + src/main/java/htsjdk/samtools/SBIIndex.java - + src/main/java/htsjdk/samtools/SBIIndexWriter.java - src/main/java/htsjdk/samtools/SamReaderFactory.java - src/main/java/htsjdk/samtools/SamStreams.java - src/main/java/htsjdk/samtools/apps/TimeChannel.java - src/main/java/htsjdk/samtools/apps/TimeRandomAccessFile.java - src/main/java/htsjdk/samtools/cram/build/CompressionHeaderFactory.java - src/main/java/htsjdk/samtools/cram/build/ContainerFactory.java - src/main/java/htsjdk/samtools/cram/build/CramIO.java - src/main/java/htsjdk/samtools/cram/io/ExternalCompression.java → src/main/java/htsjdk/samtools/cram/compression/ExternalCompression.java - src/main/java/htsjdk/samtools/cram/encoding/ExternalCompressor.java → src/main/java/htsjdk/samtools/cram/compression/ExternalCompressor.java - src/main/java/htsjdk/samtools/cram/encoding/rans/Constants.java → src/main/java/htsjdk/samtools/cram/compression/rans/Constants.java - src/main/java/htsjdk/samtools/cram/encoding/rans/D04.java → src/main/java/htsjdk/samtools/cram/compression/rans/D04.java - src/main/java/htsjdk/samtools/cram/encoding/rans/D14.java → src/main/java/htsjdk/samtools/cram/compression/rans/D14.java - src/main/java/htsjdk/samtools/cram/encoding/rans/Decoding.java → src/main/java/htsjdk/samtools/cram/compression/rans/Decoding.java - src/main/java/htsjdk/samtools/cram/encoding/rans/E04.java → src/main/java/htsjdk/samtools/cram/compression/rans/E04.java - src/main/java/htsjdk/samtools/cram/encoding/rans/E14.java → src/main/java/htsjdk/samtools/cram/compression/rans/E14.java - src/main/java/htsjdk/samtools/cram/encoding/rans/Encoding.java → src/main/java/htsjdk/samtools/cram/compression/rans/Encoding.java - src/main/java/htsjdk/samtools/cram/encoding/rans/Frequencies.java → src/main/java/htsjdk/samtools/cram/compression/rans/Frequencies.java - src/main/java/htsjdk/samtools/cram/encoding/rans/RANS.java → src/main/java/htsjdk/samtools/cram/compression/rans/RANS.java - src/main/java/htsjdk/samtools/cram/encoding/rans/Utils.java → src/main/java/htsjdk/samtools/cram/compression/rans/Utils.java - − src/main/java/htsjdk/samtools/cram/encoding/BitCodec.java - + src/main/java/htsjdk/samtools/cram/encoding/ByteArrayLenCodec.java - src/main/java/htsjdk/samtools/cram/encoding/ByteArrayLenEncoding.java - + src/main/java/htsjdk/samtools/cram/encoding/CRAMCodec.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/cfc2c703ab904b6cdca5e2b2e5b91e3a0a55ccf5 -- View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/cfc2c703ab904b6cdca5e2b2e5b91e3a0a55ccf5 You're receiving this email because of your account on salsa.debian.org.
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